OFLC_0001346401 (Onchocerca flexuosa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 OFLC_0001346401 T259622_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.815 0.815
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.815 0.815
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.815 0.815
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.778 0.778
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.778 0.778
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.778 0.778
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.778 0.778
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.778 0.778
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.778 0.778
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.778 0.778
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.778 0.778
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.778 0.778
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.778 0.778
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.778 0.778
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.778 0.778
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.778 0.778
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.778 0.778
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.778 0.778
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.778 0.778
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.778 0.778
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.778 0.778
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.778 0.778
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.778 0.778
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.778 0.778
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OFLC_0001346401-mRNA-1 MADS box 39 65

Links

Other MADS box family TFs
Other Onchocerca flexuosa TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
AGAP010511 Anopheles gambiae AGAP010511 I 0.913
AARA006326 Anopheles arabiensis AARA006326 I 0.913
AMEC009624 Anopheles melas AMEC009624 I 0.913
ACOM041695 Anopheles coluzzii ACOM041695 I 0.913
AQUA001309 Anopheles quadriannulatus AQUA001309 I 0.913
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
KGM_22252 Danaus plexippus KGM_22252 I 0.875
LCUP011662 Lucilia cuprina LCUP011662 I 0.875
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.875
ASTEI07121 Anopheles stephensi ASTEI07121 I 0.875
HMEL017831 Heliconius melpomene HMEL017831 I 0.875
BGIBMGA001382 Bombyx mori BGIBMGA001382 I 0.875
ASU_14961 Ascaris suum ASU_14961 I 0.852
BTMF_0000835601 Brugia timori BTMF_0000835601 I 0.852
DME_0000010001 Dracunculus medinensis DME_0000010001 I 0.852
EVEC_0001294401 Enterobius vermicularis EVEC_0001294401 N 0.852
EEL_0000867301 Elaeophora elaphi EEL_0000867301 I 0.852
ASU_11865 Ascaris suum ASU_11865 I 0.852
ASIM_0002132201 Anisakis simplex ASIM_0002132201 I 0.852
LOAG_01601 Loa loa LOAG_01601 I 0.852
WBGene00243571 Onchocerca volvulus WBGene00243571 I 0.852
Bm7708 Brugia malayi Bm7708 I 0.852
Bm3022 Brugia malayi Bm3022 I 0.852
GPUH_0001673101 Gongylonema pulchrum GPUH_0001673101 I 0.852
WUBG_06152 Wuchereria bancrofti WUBG_06152 I 0.852
SVE_1017000 Strongyloides venezuelensis SVE_1017000 I 0.852
nAv.1.0.1.g08666 Acanthocheilonema viteae nAv.1.0.1.g08666 I 0.852
SSTP_0000932200 Strongyloides stercoralis SSTP_0000932200 I 0.852
SPAL_0000748100 Strongyloides papillosus SPAL_0000748100 I 0.852
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.852
TCLT_0000849901 Thelazia callipaeda TCLT_0000849901 I 0.852
nOo.2.0.1.g11137 Onchocerca ochengi nOo.2.0.1.g11137 I 0.852
nDi.2.2.2.g03920 Dirofilaria immitis nDi.2.2.2.g03920 I 0.852
PTRK_0001139200 Parastrongyloides trichosuri PTRK_0001139200 I 0.852
nLs.2.1.2.g09548 Litomosoides sigmodontis nLs.2.1.2.g09548 I 0.852
GB47234 Apis mellifera GB47234 I 0.815
CpipJ_CPIJ008336 Culex pipiens CpipJ_CPIJ008336 I 0.815
L798_08800 Zootermopsis nevadensis L798_08800 I 0.815
GE14398 Drosophila yakuba FBgn0232006 I 0.815
GM11854 Drosophila sechellia FBgn0166795 I 0.815
GH20989 Drosophila grimshawi FBgn0128451 I 0.815
GG22961 Drosophila erecta FBgn0115118 I 0.815
GF11392 Drosophila ananassae FBgn0088432 I 0.815
GI21322 Drosophila mojavensis FBgn0144052 I 0.815
GL20046 Drosophila persimilis FBgn0157643 I 0.815
GJ21595 Drosophila virilis FBgn0208714 I 0.815
GD11852 Drosophila simulans FBgn0183591 I 0.815
CJA08385 Caenorhabditis japonica CJA08385 I 0.815
GK22205 Drosophila willistoni FBgn0224190 I 0.815
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.815
ALUE_0001693901 Ascaris lumbricoides ALUE_0001693901 I 0.815
MDOA002443 Musca domestica MDOA002443 I 0.815
ANCDUO_13359 Ancylostoma duodenale ANCDUO_13359 I 0.815
ANCDUO_18278 Ancylostoma duodenale ANCDUO_18278 I 0.815
scaffold2825-EXSNAP2012.1 Pristionchus exspectatus scaffold2825-EXSNAP2012.1 I 0.815
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.815
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.815
ACEP12187 Atta cephalotes ACEP12187 I 0.815
TC004911 Tribolium castaneum TC004911 I 0.815
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.815
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.815
snap_masked-nMf.1.1.scaf02542-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf02542-processed-gene-0.2 N 0.815
ADIR000345 Anopheles dirus ADIR000345 N 0.815
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.815
NV18787 Nasonia vitripennis NV18787 I 0.815
MESCA004860 Megaselia scalaris MESCA004860 I 0.815
bs Drosophila melanogaster FBgn0004101 D 0.815
CPIJ008336 Culex quinquefasciatus CPIJ008336 I 0.815
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.778
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.778
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.778
SRF Homo sapiens ENSG00000112658 D 0.778
PPAI006358 Phlebotomus papatasi PPAI006358 I 0.778
SRF Equus caballus ENSECAG00000009068 I 0.778
D917_02561 Trichinella nativa D917_02561 I 0.778
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.778
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.778
SRF Felis catus ENSFCAG00000025180 I 0.778
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.778
AFAF006302 Anopheles farauti AFAF006302 I 0.778
AEPI007009 Anopheles epiroticus AEPI007009 I 0.778
SRF Macaca mulatta ENSMMUG00000000033 I 0.778
ACUA001543 Anopheles culicifacies ACUA001543 I 0.778
AFUN006149 Anopheles funestus AFUN006149 I 0.778
AMAM005702 Anopheles maculatus AMAM005702 I 0.778
D918_07967 Trichuris suis D918_07967 I 0.778
AMIN001256 Anopheles minimus AMIN001256 I 0.778
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.778
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.778
srfb Danio rerio ENSDARG00000102867 I 0.778
SRF Anolis carolinensis ENSACAG00000004798 I 0.778
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.778
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.778
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.778
EFV60876 Trichinella spiralis EFV60876 I 0.778
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.778
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.778
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.778
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.778
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.778
SRF Bos taurus ENSBTAG00000012777 I 0.778
L889_g24087 Steinernema feltiae L889_g24087 I 0.778
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.778
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.778
srfa Danio rerio ENSDARG00000053918 I 0.778
L892_g14520 Steinernema scapterisci L892_g14520 I 0.778
L893_g14743 Steinernema glaseri L893_g14743 I 0.778
SRF Canis familiaris ENSCAFG00000001829 I 0.778
SRF Callithrix jacchus ENSCJAG00000005223 I 0.778
L898_g9834 Steinernema monticolum L898_g9834 I 0.778
ACHR006794 Anopheles christyi ACHR006794 I 0.778
SRF Monodelphis domestica ENSMODG00000018981 I 0.778
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.778
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.778
CapteG221100 Capitella teleta CapteG221100 I 0.778
ISCW019966 Ixodes scapularis ISCW019966 I 0.778
LotgiG59850 Lottia gigantea LotgiG59850 I 0.778
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.778
AATE005744 Anopheles atroparvus AATE005744 I 0.778
SRF Oryzias latipes ENSORLG00000013036 I 0.778
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.778
SRF Pan troglodytes ENSPTRG00000018189 I 0.778
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.778
srfa Takifugu rubripes ENSTRUG00000011448 I 0.778
SRF Takifugu rubripes ENSTRUG00000017531 I 0.778
SRF Tursiops truncatus ENSTTRG00000007017 I 0.778
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.778
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.778
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.778
Srf Rattus norvegicus ENSRNOG00000018232 I 0.778
SRF Sus scrofa ENSSSCG00000001661 I 0.778
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.778
SINV23963 Solenopsis invicta SINV23963 I 0.778
RPRC001752 Rhodnius prolixus RPRC001752 I 0.778
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.778
AALB009947 Anopheles albimanus AALB009947 I 0.778
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.778
SMAR003014 Strigamia maritima SMAR003014 I 0.778
srf.L Xenopus laevis XB-GENE-864819 I 0.778
CLEC013393 Cimex lectularius CLEC013393 I 0.778
Srf Mus musculus ENSMUSG00000015605 D 0.778
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.778
HHAL001484-PA Halyomorpha halys HHAL001484-PA I 0.778
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.778
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.778
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.778
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.778
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.778
YQE_03076 Dendroctonus ponderosae YQE_03076 I 0.778
SRF Otolemur garnettii ENSOGAG00000029623 I 0.778
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.778
srf Xenopus tropicalis XB-GENE-482036 I 0.778
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.778
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.778
ENSXMAG00000018559 Xiphophorus maculatus ENSXMAG00000018559 I 0.741
SRF Choloepus hoffmanni ENSCHOG00000008671 I 0.741
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.741
srf Ciona intestinalis ENSCING00000018042 I 0.741
HelroG137972 Helobdella robusta HelroG137972 I 0.704
AAEL010925 Aedes aegypti AAEL010925 I 0.704