Bo7g003580 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo7g003580 T267465_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB

VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.708 0.851
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD

HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.708 0.851
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.682 0.851
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.682 0.851
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.671 0.851
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.671 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g003580.1 Myb 178 229

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT2G20400 Arabidopsis thaliana AT2G20400 D 0.708
PHR1 Arabidopsis thaliana AT4G28610 D 0.671
PHL1 Arabidopsis thaliana AT5G29000 D 0.682
PHR1 Oryza sativa OS03G0329900 D 0.671
TRIUR3_02291 Triticum urartu TRIUR3_02291 I 0.661
Carubv10001064m.g Capsella rubella Carubv10001064m.g I 0.671
Cagra.1225s0029 Capsella grandiflora Cagra.1225s0029 I 0.671
Bostr.7903s0128 Boechera stricta Bostr.7903s0128 I 0.749
Bostr.7867s0704 Boechera stricta Bostr.7867s0704 I 0.671
Carubv10002022m.g Capsella rubella Carubv10002022m.g I 0.661
Ciclev10019956m.g Citrus clementina Ciclev10019956m.g I 0.731
Eucgr.A01323 Eucalyptus grandis Eucgr.A01323 I 0.671
Eucgr.B02155 Eucalyptus grandis Eucgr.B02155 I 0.680
evm.TU.supercontig_87.3 Carica papaya evm.TU.supercontig_87.3 I 0.671
gene08317-v1.0-hybrid Fragaria vesca gene08317-v1.0-hybrid I 0.720
gene16679-v1.0-hybrid Fragaria vesca gene16679-v1.0-hybrid I 0.689
Bostr.23151s0001 Boechera stricta Bostr.23151s0001 I 0.682
Aquca_017_00793 Aquilegia coerulea Aquca_017_00793 I 0.671
VIT_07s0005g04120 Vitis vinifera VIT_07s0005g04120 I 0.731
VIT_14s0036g01380 Vitis vinifera VIT_14s0036g01380 I 0.687
Ca_03781 Cicer arietinum Ca_03781 I 0.723
Ca_12255 Cicer arietinum Ca_12255 I 0.731
Pm003600 Prunus mume Pm003600 I 0.689
29637.m000753 Ricinus communis 29637.m000753 I 0.731
cassava22661.valid.m1 Manihot esculenta cassava22661.valid.m1 I 0.681
cassava31821.valid.m1 Manihot esculenta cassava31821.valid.m1 I 0.709
cassava37547.valid.m1 Manihot esculenta cassava37547.valid.m1 I 0.731
estExt_fgenesh1_pg.C_2260017 Physcomitrella patens estExt_fgenesh1_pg.C_2260017 I 0.665
estExt_fgenesh1_pg.C_2690029 Physcomitrella patens estExt_fgenesh1_pg.C_2690029 I 0.665
mgf005047m Mimulus guttatus mgf005047m I 0.671
Gorai.004G023100 Gossypium raimondii Gorai.004G023100 I 0.683
Gorai.007G149100 Gossypium raimondii Gorai.007G149100 I 0.731
Pavir.J39104 Panicum virgatum Pavir.J39104 I 0.731
SapurV1A.0252s0390 Salix purpurea SapurV1A.0252s0390 I 0.671
SapurV1A.0307s0080 Salix purpurea SapurV1A.0307s0080 I 0.692
SapurV1A.0309s0130 Salix purpurea SapurV1A.0309s0130 I 0.698
Thhalv10002005m.g Eutrema salsugineum Thhalv10002005m.g I 0.715
Thhalv10025330m.g Eutrema salsugineum Thhalv10025330m.g I 0.671
PK01035.1 Cannabis sativa PK01035.1 I 0.731
PK01823.1 Cannabis sativa PK01823.1 I 0.671
chr1.CM0295.930.nd Lotus japonicus chr1.CM0295.930.nd I 0.731
chr1.CM0600.200.nd Lotus japonicus chr1.CM0600.200.nd I 0.663
LjSGA_026114.1 Lotus japonicus LjSGA_026114.1 I 0.723
PDK_20s1306081g005 Phoenix dactylifera PDK_20s1306081g005 I 0.720
Pavir.Ia03429 Panicum virgatum Pavir.Ia03429 I 0.731
Pavir.Bb01566 Panicum virgatum Pavir.Bb01566 I 0.720
Gorai.007G274700 Gossypium raimondii Gorai.007G274700 I 0.686
Lus10008197.g Linum usitatissimum Lus10008197.g I 0.692
Lus10022885.g Linum usitatissimum Lus10022885.g I 0.731
Lus10022886.g Linum usitatissimum Lus10022886.g I 0.671
Lus10024938.g Linum usitatissimum Lus10024938.g I 0.731
Lus10029607.g Linum usitatissimum Lus10029607.g I 0.691
Lus10032778.g Linum usitatissimum Lus10032778.g I 0.670
MDP0000248927 Malus domestica MDP0000248927 I 0.720
MDP0000285150 Malus domestica MDP0000285150 I 0.731
MDP0000321461 Malus domestica MDP0000321461 I 0.731
orange1.1g011805m.g Citrus sinensis orange1.1g011805m.g I 0.731
Pavir.Ba02554 Panicum virgatum Pavir.Ba02554 I 0.720
PDK_20s1384631g001 Phoenix dactylifera PDK_20s1384631g001 I 0.684
Traes_6BL_5D8EE6802 Triticum aestivum Traes_6BL_5D8EE6802 I 0.661
AMTR_s00142p00049490 Amborella trichopoda AMTR_s00142p00049490 I 0.731
GLYMA03G32350 Glycine max GLYMA03G32350 I 0.731
GLYMA03G41040 Glycine max GLYMA03G41040 I 0.663
GLYMA10G04540 Glycine max GLYMA10G04540 I 0.731
GLYMA13G18805 Glycine max GLYMA13G18805 I 0.731
GLYMA19G35080 Glycine max GLYMA19G35080 I 0.731
GLYMA19G43690 Glycine max GLYMA19G43690 I 0.723
GRMZM2G006477 Zea mays GRMZM2G006477 I 0.731
GSMUA_Achr11G02560_001 Musa acuminata GSMUA_Achr11G02560_001 I 0.720
GSMUA_Achr2G10180_001 Musa acuminata GSMUA_Achr2G10180_001 I 0.676
GSMUA_Achr4G30200_001 Musa acuminata GSMUA_Achr4G30200_001 I 0.717
GSMUA_Achr5G12960_001 Musa acuminata GSMUA_Achr5G12960_001 I 0.731
PHR1 Arabidopsis lyrata fgenesh2_kg.7__1335__AT4G28610.1 I 0.671
PHL1 Arabidopsis lyrata fgenesh2_kg.6__2806__AT5G29000.2 I 0.682
fgenesh1_pm.C_scaffold_3000324 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000324 I 0.670
BGIOSGA005373 Oryza indica BGIOSGA005373 I 0.661
PHR1 Oryza indica BGIOSGA012553 I 0.671
Bo2g151830 Brassica oleracea Bo2g151830 I 0.671
Bo8g054450 Brassica oleracea Bo8g054450 I 0.671
Bo9g010090 Brassica oleracea Bo9g010090 I 0.721
Bo9g028250 Brassica oleracea Bo9g028250 I 0.800
Bra010355 Brassica rapa Bra010355 I 0.671
Bra020622 Brassica rapa Bra020622 I 0.671
Bra036123 Brassica rapa Bra036123 I 0.721
Bra036469 Brassica rapa Bra036469 I 0.847
Bra036679 Brassica rapa Bra036679 I 0.800
GSMUA_Achr8G12580_001 Musa acuminata GSMUA_Achr8G12580_001 I 0.731
LPERR03G14050 Leersia perrieri LPERR03G14050 I 0.671
MTR_1g080330 Medicago truncatula MTR_1g080330 I 0.723
PRUPE_ppa005708mg Prunus persica PRUPE_ppa005708mg I 0.689
Sb01g036440 Sorghum bicolor Sb01g036440 I 0.731
Sb02g010520 Sorghum bicolor Sb02g010520 I 0.720
scaffold_304362.1 Arabidopsis lyrata scaffold_304362.1 I 0.749
SELMODRAFT_405399 Selaginella moellendorffii SELMODRAFT_405399 I 0.684
SELMODRAFT_447260 Selaginella moellendorffii SELMODRAFT_447260 I 0.684
Si029945m.g Setaria italica Si029945m.g I 0.720
Si035682m.g Setaria italica Si035682m.g I 0.731
Solyc06g008200.2 Solanum lycopersicum Solyc06g008200.2 I 0.671
Solyc09g072830.2 Solanum lycopersicum Solyc09g072830.2 I 0.671
TCM_003939 Theobroma cacao TCM_003939 I 0.731
PRUPE_ppa004886mg Prunus persica PRUPE_ppa004886mg I 0.720
POPTR_0019s03750 Populus trichocarpa POPTR_0019s03750 I 0.692
POPTR_0013s04530 Populus trichocarpa POPTR_0013s04530 I 0.710
MTR_7g098250 Medicago truncatula MTR_7g098250 I 0.731
MTR_7g115530 Medicago truncatula MTR_7g115530 I 0.684
OB02G43730 Oryza brachyantha OB02G43730 I 0.661
OB03G25800 Oryza brachyantha OB03G25800 I 0.671
OLONG_005622 Oryza longistaminata OLONG_005622 I 0.671
OLONG_010553 Oryza longistaminata OLONG_010553 I 0.661
OMERI03G14370 Oryza meridionalis OMERI03G14370 I 0.671
ONIVA03G17050 Oryza nivara ONIVA03G17050 I 0.671
OPUNC03G15590 Oryza punctata OPUNC03G15590 I 0.671
ORGLA03G0154000 Oryza glaberrima ORGLA03G0154000 I 0.671
ORUFI02G38560 Oryza rufipogon ORUFI02G38560 I 0.661
TCM_026171 Theobroma cacao TCM_026171 I 0.671