Bo7g003580 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo7g003580 T267465_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20400
M07046_2.00 		Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN		 Dap-seq
OMalley et al.(2016)
AT2G20400_col_a 		0.708 0.851
AT2G20400
M07047_2.00 		Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY		 Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a 		0.708 0.851
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.682 0.851
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.682 0.851
PHR1
M02302_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7249 		0.671 0.851
PHR1
M02329_2.00 		Oryza sativa
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7755 		0.671 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g003580.1 Myb 178 229

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22671 Aegilops tauschii F775_22671 N 0.000
F775_22440 Aegilops tauschii F775_22440 N 0.000
BRADI1G29857 Brachypodium distachyon BRADI1G29857 N 0.000
BRADI1G76207 Brachypodium distachyon BRADI1G76207 N 0.000
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N 0.000
MLOC_65456 Hordeum vulgare MLOC_65456 N 0.000
LPERR03G02450 Leersia perrieri LPERR03G02450 N 0.000
LPERR06G23420 Leersia perrieri LPERR06G23420 N 0.000
MDP0000868556 Malus domestica MDP0000868556 N 0.000
MDP0000480581 Malus domestica MDP0000480581 N 0.000
cassava13355.valid.m1 Manihot esculenta cassava13355.valid.m1 N 0.000
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N 0.000
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N 0.000
GSMUA_Achr11G01320_001 Musa acuminata GSMUA_Achr11G01320_001 N 0.000
OBART03G02620 Oryza barthii OBART03G02620 N 0.000
OBART03G02630 Oryza barthii OBART03G02630 N 0.000
OBART06G27980 Oryza barthii OBART06G27980 N 0.000
OB03G12640 Oryza brachyantha OB03G12640 N 0.000
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N 0.000
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N 0.000
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N 0.000
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N 0.000
BGIOSGA020507 Oryza indica BGIOSGA020507 N 0.000
BGIOSGA011514 Oryza indica BGIOSGA011514 N 0.000
OLONG_016677 Oryza longistaminata OLONG_016677 N 0.000
OMERI06G27920 Oryza meridionalis OMERI06G27920 N 0.000
ONIVA03G02250 Oryza nivara ONIVA03G02250 N 0.000
ONIVA06G30950 Oryza nivara ONIVA06G30950 N 0.000
OPUNC06G25510 Oryza punctata OPUNC06G25510 N 0.000
OPUNC03G02420 Oryza punctata OPUNC03G02420 N 0.000
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N 0.000
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N 0.000
OS03G0133000 Oryza sativa OS03G0133000 N 0.000
OS06G0726300 Oryza sativa OS06G0726300 N 0.000
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N 0.000
Pavir.J24394 Panicum virgatum Pavir.J24394 N 0.000
Pm020961 Prunus mume Pm020961 N 0.000
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N 0.000
Si006994m.g Setaria italica Si006994m.g N 0.000
Si036757m.g Setaria italica Si036757m.g N 0.000
Sb10g030770 Sorghum bicolor Sb10g030770 N 0.000
Sb01g048130 Sorghum bicolor Sb01g048130 N 0.000
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N 0.000
Traes_4BL_27B9E4CE6 Triticum aestivum Traes_4BL_27B9E4CE6 N 0.000
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N 0.000
TRIUR3_32216 Triticum urartu TRIUR3_32216 N 0.000
TRIUR3_33949 Triticum urartu TRIUR3_33949 N 0.000
TRIUR3_18560 Triticum urartu TRIUR3_18560 N 0.000
anac036 Vitis vinifera VIT_03s0038g03410 N 0.000
GRMZM2G059428 Zea mays GRMZM2G059428 N 0.000
GRMZM2G126817 Zea mays GRMZM2G126817 N 0.000
GRMZM2G074358 Zea mays GRMZM2G074358 N 0.000
GRMZM2G389557 Zea mays GRMZM2G389557 N 0.000