CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo7g003580
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo7g003580
T267465_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.708
0.851
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.708
0.851
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.682
0.851
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.682
0.851
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.671
0.851
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.671
0.830
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo7g003580.1
Myb
178
229
RVRWTPELHETFVEAVNQLGGMENAKPKAVLKHMKVQGLTIYHVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_22671
Aegilops tauschii
F775_22671
N
0.000
F775_22440
Aegilops tauschii
F775_22440
N
0.000
BRADI1G29857
Brachypodium distachyon
BRADI1G29857
N
0.000
BRADI1G76207
Brachypodium distachyon
BRADI1G76207
N
0.000
gene17203-v1.0-hybrid
Fragaria vesca
gene17203-v1.0-hybrid
N
0.000
MLOC_65456
Hordeum vulgare
MLOC_65456
N
0.000
LPERR03G02450
Leersia perrieri
LPERR03G02450
N
0.000
LPERR06G23420
Leersia perrieri
LPERR06G23420
N
0.000
MDP0000868556
Malus domestica
MDP0000868556
N
0.000
MDP0000480581
Malus domestica
MDP0000480581
N
0.000
cassava13355.valid.m1
Manihot esculenta
cassava13355.valid.m1
N
0.000
GSMUA_Achr3G14720_001
Musa acuminata
GSMUA_Achr3G14720_001
N
0.000
GSMUA_Achr3G00560_001
Musa acuminata
GSMUA_Achr3G00560_001
N
0.000
GSMUA_Achr11G01320_001
Musa acuminata
GSMUA_Achr11G01320_001
N
0.000
OBART03G02620
Oryza barthii
OBART03G02620
N
0.000
OBART03G02630
Oryza barthii
OBART03G02630
N
0.000
OBART06G27980
Oryza barthii
OBART06G27980
N
0.000
OB03G12640
Oryza brachyantha
OB03G12640
N
0.000
ORGLA06G0236900
Oryza glaberrima
ORGLA06G0236900
N
0.000
ORGLA03G0024300
Oryza glaberrima
ORGLA03G0024300
N
0.000
OGLUM06G29360
Oryza glumaepatula
OGLUM06G29360
N
0.000
OGLUM03G02560
Oryza glumaepatula
OGLUM03G02560
N
0.000
BGIOSGA020507
Oryza indica
BGIOSGA020507
N
0.000
BGIOSGA011514
Oryza indica
BGIOSGA011514
N
0.000
OLONG_016677
Oryza longistaminata
OLONG_016677
N
0.000
OMERI06G27920
Oryza meridionalis
OMERI06G27920
N
0.000
ONIVA03G02250
Oryza nivara
ONIVA03G02250
N
0.000
ONIVA06G30950
Oryza nivara
ONIVA06G30950
N
0.000
OPUNC06G25510
Oryza punctata
OPUNC06G25510
N
0.000
OPUNC03G02420
Oryza punctata
OPUNC03G02420
N
0.000
ORUFI03G02380
Oryza rufipogon
ORUFI03G02380
N
0.000
ORUFI06G29930
Oryza rufipogon
ORUFI06G29930
N
0.000
OS03G0133000
Oryza sativa
OS03G0133000
N
0.000
OS06G0726300
Oryza sativa
OS06G0726300
N
0.000
Pavir.Ia04458
Panicum virgatum
Pavir.Ia04458
N
0.000
Pavir.J24394
Panicum virgatum
Pavir.J24394
N
0.000
Pm020961
Prunus mume
Pm020961
N
0.000
PRUPE_ppa009455mg
Prunus persica
PRUPE_ppa009455mg
N
0.000
Si006994m.g
Setaria italica
Si006994m.g
N
0.000
Si036757m.g
Setaria italica
Si036757m.g
N
0.000
Sb10g030770
Sorghum bicolor
Sb10g030770
N
0.000
Sb01g048130
Sorghum bicolor
Sb01g048130
N
0.000
Traes_4DL_7CB8EC5A8
Triticum aestivum
Traes_4DL_7CB8EC5A8
N
0.000
Traes_4BL_27B9E4CE6
Triticum aestivum
Traes_4BL_27B9E4CE6
N
0.000
Traes_4DL_B29067862
Triticum aestivum
Traes_4DL_B29067862
N
0.000
TRIUR3_32216
Triticum urartu
TRIUR3_32216
N
0.000
TRIUR3_33949
Triticum urartu
TRIUR3_33949
N
0.000
TRIUR3_18560
Triticum urartu
TRIUR3_18560
N
0.000
anac036
Vitis vinifera
VIT_03s0038g03410
N
0.000
GRMZM2G059428
Zea mays
GRMZM2G059428
N
0.000
GRMZM2G126817
Zea mays
GRMZM2G126817
N
0.000
GRMZM2G074358
Zea mays
GRMZM2G074358
N
0.000
GRMZM2G389557
Zea mays
GRMZM2G389557
N
0.000