Bra027389 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra027389 T268011_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.672 0.762
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra027389.1-P Myb 14 52
Bra027389.1-P Myb 58 102

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10015608.g Linum usitatissimum Lus10015608.g I 0.758
Ca_10069 Cicer arietinum Ca_10069 I 0.758
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I 0.758
GLYMA07G01050 Glycine max GLYMA07G01050 I 0.758
GLYMA08G20440 Glycine max GLYMA08G20440 I 0.758
TCM_029065 Theobroma cacao TCM_029065 I 0.758
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I 0.758
GLYMA13G42431 Glycine max GLYMA13G42431 I 0.758
Pm013322 Prunus mume Pm013322 I 0.758
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I 0.758
MDP0000148894 Malus domestica MDP0000148894 I 0.758
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I 0.758
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.758
Bo1g134790 Brassica oleracea Bo1g134790 I 0.758
PK22855.1 Cannabis sativa PK22855.1 I 0.758
Bra021515 Brassica rapa Bra021515 I 0.758
MYB26 Populus trichocarpa POPTR_0001s20370 I 0.755
cassava34928.m1 Manihot esculenta cassava34928.m1 I 0.755
cassava176.valid.m1 Manihot esculenta cassava176.valid.m1 I 0.755
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.755
Solyc03g121740.1 Solanum lycopersicum Solyc03g121740.1 I 0.751
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I 0.749
Aquca_020_00444 Aquilegia coerulea Aquca_020_00444 I 0.749
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I 0.749
Ca_02730 Cicer arietinum Ca_02730 I 0.749
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I 0.749
Gorai.009G142200 Gossypium raimondii Gorai.009G142200 I 0.748
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.745
Ciclev10027201m.g Citrus clementina Ciclev10027201m.g I 0.744
OB01G37410 Oryza brachyantha OB01G37410 I 0.742
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.742
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.742
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.742
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.742
MTR_8g017440 Medicago truncatula MTR_8g017440 I 0.742
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.742
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.742
Si002319m.g Setaria italica Si002319m.g I 0.739
OS01G0709000 Oryza sativa OS01G0709000 I 0.733
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.733
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.733
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.733
Cla012793 Citrullus lanatus Cla012793 I 0.730
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.728
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.728
MTR_2g099740 Medicago truncatula MTR_2g099740 I 0.728
MYB26 Arabidopsis thaliana AT3G13890 I 0.728
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.728
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I 0.728
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.728
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.728
MTR_8g017500 Medicago truncatula MTR_8g017500 I 0.722
PGSC0003DMG400037038 Solanum tuberosum PGSC0003DMG400037038 I 0.721
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.721
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.720
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.720
F775_17110 Aegilops tauschii F775_17110 I 0.709
GRMZM2G088783 Zea mays GRMZM2G088783 I 0.709
MLOC_18177 Hordeum vulgare MLOC_18177 I 0.709
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I 0.709
TRIUR3_25230 Triticum urartu TRIUR3_25230 I 0.709
MTR_8g017390 Medicago truncatula MTR_8g017390 I 0.703
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I 0.700
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.699
LPERR05G20350 Leersia perrieri LPERR05G20350 N 0.696
Bo5g131980 Brassica oleracea Bo5g131980 N 0.689
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I 0.687
mgf024107m Mimulus guttatus mgf024107m I 0.687
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I 0.687
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I 0.687
gene31836-v1.0-hybrid Fragaria vesca gene31836-v1.0-hybrid I 0.685
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I 0.684
LjSGA_115006.1 Lotus japonicus LjSGA_115006.1 I 0.680
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.680
TCM_005977 Theobroma cacao TCM_005977 I 0.679
GLYMA08G17371 Glycine max GLYMA08G17371 I 0.679
MTR_8g017350 Medicago truncatula MTR_8g017350 I 0.677
Pm023938 Prunus mume Pm023938 I 0.677
MDP0000158937 Malus domestica MDP0000158937 I 0.676
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I 0.675
MTR_8g017340 Medicago truncatula MTR_8g017340 I 0.673
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.673
ATY53 Arabidopsis thaliana AT3G12720 D 0.672
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.672
Carubv10015099m.g Capsella rubella Carubv10015099m.g I 0.672
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.672
Bo1g138990 Brassica oleracea Bo1g138990 I 0.672
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.672
Bra039339 Brassica rapa Bra039339 I 0.672
30125.m001257 Ricinus communis 30125.m001257 I 0.671
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.671
GRMZM2G147698 Zea mays GRMZM2G147698 I 0.669
Pavir.J03230 Panicum virgatum Pavir.J03230 I 0.669
Pm010927 Prunus mume Pm010927 I 0.669
Sb01g034270 Sorghum bicolor Sb01g034270 I 0.669
Si036638m.g Setaria italica Si036638m.g I 0.669
PRUPE_ppa016196mg Prunus persica PRUPE_ppa016196mg I 0.669
cassava44228.m1 Manihot esculenta cassava44228.m1 I 0.667
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I 0.666
27956.m000359 Ricinus communis 27956.m000359 I 0.666
SapurV1A.0264s0440 Salix purpurea SapurV1A.0264s0440 I 0.665
Bo5g133210 Brassica oleracea Bo5g133210 I 0.663
Bra034738 Brassica rapa Bra034738 I 0.663
MTR_2g064160 Medicago truncatula MTR_2g064160 I 0.662
PGSC0003DMG400015767 Solanum tuberosum PGSC0003DMG400015767 I 0.662
POPTR_0010s00690 Populus trichocarpa POPTR_0010s00690 I 0.661