POPTR_0003s15440 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0003s15440 T278249_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.810 0.860
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s15440.1 Myb 27 74
POPTR_0003s15440.1 Myb 80 125

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I 0.885
GLYMA08G17371 Glycine max GLYMA08G17371 I 0.847
MTR_2g064160 Medicago truncatula MTR_2g064160 I 0.830
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I 0.828
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I 0.828
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.827
30125.m001257 Ricinus communis 30125.m001257 I 0.827
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I 0.818
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I 0.818
TCM_005977 Theobroma cacao TCM_005977 I 0.818
cassava44228.m1 Manihot esculenta cassava44228.m1 I 0.817
cassava33147.m1 Manihot esculenta cassava33147.m1 I 0.814
SapurV1A.0236s0090 Salix purpurea SapurV1A.0236s0090 I 0.813
ATY53 Arabidopsis lyrata scaffold_301452.1 I 0.812
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I 0.812
LjT35F06.10.nd Lotus japonicus LjT35F06.10.nd I 0.811
ATY53 Arabidopsis thaliana AT3G12720 D 0.810
Carubv10015099m.g Capsella rubella Carubv10015099m.g I 0.810
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.810
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.803
GLYMA15G41810 Glycine max GLYMA15G41810 I 0.803
POPTR_0001s12240 Populus trichocarpa POPTR_0001s12240 I 0.801
Pm010927 Prunus mume Pm010927 I 0.798
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I 0.798
27956.m000359 Ricinus communis 27956.m000359 I 0.797
Bo1g138990 Brassica oleracea Bo1g138990 I 0.797
Bra039339 Brassica rapa Bra039339 I 0.797
Bo5g133210 Brassica oleracea Bo5g133210 I 0.794
Bra034738 Brassica rapa Bra034738 I 0.794
ATY53 Vitis vinifera VIT_19s0085g00940 I 0.791
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I 0.790
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I 0.790
TCM_033645 Theobroma cacao TCM_033645 I 0.785
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.773
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.772
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I 0.766
MDP0000226667 Malus domestica MDP0000226667 I 0.765
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.764
cassava26068.m1 Manihot esculenta cassava26068.m1 I 0.763
MDP0000157506 Malus domestica MDP0000157506 I 0.763
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I 0.762
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I 0.762
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.757
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.756
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.755
OS01G0709000 Oryza sativa OS01G0709000 I 0.755
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.755
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.755
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.753
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.753
POPTR_0010s18170 Populus trichocarpa POPTR_0010s18170 I 0.751
Pm010847 Prunus mume Pm010847 I 0.751
Ca_02730 Cicer arietinum Ca_02730 I 0.751
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I 0.751
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I 0.751
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I 0.749
Aquca_020_00444 Aquilegia coerulea Aquca_020_00444 I 0.747
gene19934-v1.0-hybrid Fragaria vesca gene19934-v1.0-hybrid I 0.746
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.745
cassava176.valid.m1 Manihot esculenta cassava176.valid.m1 I 0.745
Cla012793 Citrullus lanatus Cla012793 I 0.744
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.743
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.743
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I 0.742
GLYMA13G42431 Glycine max GLYMA13G42431 I 0.742
GLYMA07G01050 Glycine max GLYMA07G01050 I 0.742
GLYMA08G20440 Glycine max GLYMA08G20440 I 0.742
Ca_10069 Cicer arietinum Ca_10069 I 0.742
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I 0.742
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I 0.742
Lus10015608.g Linum usitatissimum Lus10015608.g I 0.742
TCM_029065 Theobroma cacao TCM_029065 I 0.742
PK22855.1 Cannabis sativa PK22855.1 I 0.742
MDP0000148894 Malus domestica MDP0000148894 I 0.742
Pm013322 Prunus mume Pm013322 I 0.742
MTR_8g017440 Medicago truncatula MTR_8g017440 I 0.742
Si002319m.g Setaria italica Si002319m.g I 0.740
MYB26 Populus trichocarpa POPTR_0001s20370 I 0.739
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.739
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.737
OB01G37410 Oryza brachyantha OB01G37410 I 0.737
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.737
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.737
cassava34928.m1 Manihot esculenta cassava34928.m1 I 0.736
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I 0.736
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I 0.735
Solyc03g121740.1 Solanum lycopersicum Solyc03g121740.1 I 0.735
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.733
Bra021515 Brassica rapa Bra021515 I 0.733
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I 0.733
Bo1g134790 Brassica oleracea Bo1g134790 I 0.733
Gorai.009G142200 Gossypium raimondii Gorai.009G142200 I 0.732
MTR_8g017500 Medicago truncatula MTR_8g017500 I 0.730
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I 0.730
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I 0.729
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I 0.729
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.728
Ciclev10027201m.g Citrus clementina Ciclev10027201m.g I 0.719
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I 0.717
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I 0.716
Carubv10020714m.g Capsella rubella Carubv10020714m.g I 0.716
Lus10038395.g Linum usitatissimum Lus10038395.g I 0.716
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.715
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I 0.714
MTR_2g099740 Medicago truncatula MTR_2g099740 I 0.712
F775_17110 Aegilops tauschii F775_17110 I 0.710
GRMZM2G088783 Zea mays GRMZM2G088783 I 0.710
MTR_8g017350 Medicago truncatula MTR_8g017350 I 0.710
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I 0.710
MLOC_18177 Hordeum vulgare MLOC_18177 I 0.710
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I 0.710
TRIUR3_25230 Triticum urartu TRIUR3_25230 I 0.710
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.708
MTR_8g017340 Medicago truncatula MTR_8g017340 I 0.706
PGSC0003DMG400037038 Solanum tuberosum PGSC0003DMG400037038 I 0.705
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.703
MYB26 Arabidopsis thaliana AT3G13890 I 0.703
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.703
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.703
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.703
GSMUA_Achr9G25110_001 Musa acuminata GSMUA_Achr9G25110_001 I 0.698
MTR_8g017390 Medicago truncatula MTR_8g017390 I 0.693
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I 0.692
TRIUR3_26358 Triticum urartu TRIUR3_26358 I 0.691
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I 0.691
BGIOSGA024270 Oryza indica BGIOSGA024270 I 0.691
Si030152m.g Setaria italica Si030152m.g I 0.691
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I 0.691
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I 0.691
LPERR07G12760 Leersia perrieri LPERR07G12760 I 0.691
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I 0.691
OS07G0497500 Oryza sativa OS07G0497500 I 0.691
OPUNC07G13970 Oryza punctata OPUNC07G13970 I 0.691
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.691
OBART07G15150 Oryza barthii OBART07G15150 I 0.691
F775_00835 Aegilops tauschii F775_00835 I 0.691
OMERI07G11910 Oryza meridionalis OMERI07G11910 I 0.691
GRMZM2G172327 Zea mays GRMZM2G172327 I 0.691
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I 0.691
Sb02g033830 Sorghum bicolor Sb02g033830 I 0.691
30054.m000809 Ricinus communis 30054.m000809 I 0.688
MTR_1g100653 Medicago truncatula MTR_1g100653 I 0.688
Bra027389 Brassica rapa Bra027389 I 0.687
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.683
gene31836-v1.0-hybrid Fragaria vesca gene31836-v1.0-hybrid I 0.682
LPERR08G03020 Leersia perrieri LPERR08G03020 I 0.680
OPUNC07G22080 Oryza punctata OPUNC07G22080 I 0.680
OB08G13090 Oryza brachyantha OB08G13090 I 0.680
OMERI07G19830 Oryza meridionalis OMERI07G19830 I 0.680
Pavir.J29561 Panicum virgatum Pavir.J29561 I 0.680
F775_18488 Aegilops tauschii F775_18488 I 0.680
OMERI08G02950 Oryza meridionalis OMERI08G02950 I 0.680
MLOC_37780 Hordeum vulgare MLOC_37780 I 0.680
OMERI03G17220 Oryza meridionalis OMERI03G17220 I 0.680
LPERR07G20400 Leersia perrieri LPERR07G20400 I 0.680
ONIVA02G07540 Oryza nivara ONIVA02G07540 I 0.680
Pavir.Fb00364 Panicum virgatum Pavir.Fb00364 I 0.680
ONIVA06G02400 Oryza nivara ONIVA06G02400 I 0.680
BGIOSGA026208 Oryza indica BGIOSGA026208 I 0.680
GRMZM2G325907 Zea mays GRMZM2G325907 I 0.680
OS08G0151300 Oryza sativa OS08G0151300 I 0.680
BGIOSGA027659 Oryza indica BGIOSGA027659 I 0.680
TRIUR3_20789 Triticum urartu TRIUR3_20789 I 0.680
Traes_7DL_AD4395F8F Triticum aestivum Traes_7DL_AD4395F8F I 0.680
OBART08G03020 Oryza barthii OBART08G03020 I 0.680
Traes_7AL_0BCF482E8 Triticum aestivum Traes_7AL_0BCF482E8 I 0.680
OGLUM07G23470 Oryza glumaepatula OGLUM07G23470 I 0.680
Si029872m.g Setaria italica Si029872m.g I 0.680
ORGLA08G0023900 Oryza glaberrima ORGLA08G0023900 I 0.680
Sb07g003320 Sorghum bicolor Sb07g003320 I 0.680
OGLUM08G03030 Oryza glumaepatula OGLUM08G03030 I 0.680
BGIOSGA010658 Oryza indica BGIOSGA010658 I 0.680
ORUFI08G03380 Oryza rufipogon ORUFI08G03380 I 0.680
ORUFI07G24600 Oryza rufipogon ORUFI07G24600 I 0.680
ORGLA07G0264800 Oryza glaberrima ORGLA07G0264800 I 0.680
Lus10001226.g Linum usitatissimum Lus10001226.g N 0.677
GLYMA20G29730 Glycine max GLYMA20G29730 I 0.677
GSMUA_Achr7G17250_001 Musa acuminata GSMUA_Achr7G17250_001 I 0.677
Ciclev10003251m.g Citrus clementina Ciclev10003251m.g I 0.676
GLYMA10G38090 Glycine max GLYMA10G38090 I 0.676
GLYMA09G33870 Glycine max GLYMA09G33870 I 0.675
e_gw1.211.99.1 Physcomitrella patens e_gw1.211.99.1 I 0.675
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.675
Pm023938 Prunus mume Pm023938 I 0.674
mgf026023m Mimulus guttatus mgf026023m I 0.674
Sb02g040480 Sorghum bicolor Sb02g040480 I 0.674
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.671
MYB111 Arabidopsis lyrata scaffold_801313.1 I 0.671
OB06G17320 Oryza brachyantha OB06G17320 I 0.670
evm.TU.supercontig_107.48 Carica papaya evm.TU.supercontig_107.48 I 0.670
MDP0000601420 Malus domestica MDP0000601420 I 0.668
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I 0.668
MDP0000932804 Malus domestica MDP0000932804 I 0.668
OB07G21090 Oryza brachyantha OB07G21090 I 0.667
cassava44907.m1 Manihot esculenta cassava44907.m1 I 0.667
Ca_07460 Cicer arietinum Ca_07460 I 0.667
Traes_2BS_CA02DC5B2 Triticum aestivum Traes_2BS_CA02DC5B2 I 0.667
PRUPE_ppa016196mg Prunus persica PRUPE_ppa016196mg I 0.667
MYB86 Arabidopsis thaliana AT5G26660 I 0.666
Cla013211 Citrullus lanatus Cla013211 I 0.666
MYB39 Vitis vinifera VIT_02s0012g01650 I 0.666
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.666
Bo2g156300 Brassica oleracea Bo2g156300 I 0.666
Bo7g095130 Brassica oleracea Bo7g095130 I 0.666
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.666
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.666
Cucsa.318610 Cucumis sativus Cucsa.318610 I 0.666
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.665
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I 0.665
PK03176.1 Cannabis sativa PK03176.1 I 0.665
gene22961-v1.0-hybrid Fragaria vesca gene22961-v1.0-hybrid I 0.665
TCM_026853 Theobroma cacao TCM_026853 I 0.665
Cla005219 Citrullus lanatus Cla005219 I 0.665
Cla020303 Citrullus lanatus Cla020303 I 0.665
Cucsa.090310 Cucumis sativus Cucsa.090310 I 0.665
MDP0000653903 Malus domestica MDP0000653903 I 0.665
cassava12868.valid.m1 Manihot esculenta cassava12868.valid.m1 I 0.665
PK02515.1 Cannabis sativa PK02515.1 I 0.663
PDK_20s1854611g001 Phoenix dactylifera PDK_20s1854611g001 I 0.663
SapurV1A.0098s0320 Salix purpurea SapurV1A.0098s0320 I 0.663
SapurV1A.0119s0140 Salix purpurea SapurV1A.0119s0140 I 0.663
GLYMA08G02080 Glycine max GLYMA08G02080 I 0.663
Bo9g029530 Brassica oleracea Bo9g029530 I 0.663
Bo9g033970 Brassica oleracea Bo9g033970 I 0.663
Bra027771 Brassica rapa Bra027771 I 0.663
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000072 I 0.663
GLYMA01G43120 Glycine max GLYMA01G43120 I 0.663
Thhalv10023948m.g Eutrema salsugineum Thhalv10023948m.g I 0.663
orange1.1g020613m.g Citrus sinensis orange1.1g020613m.g I 0.663
AtMYB103 Arabidopsis thaliana AT1G63910 I 0.663
Cagra.6972s0001 Capsella grandiflora Cagra.6972s0001 I 0.663
cassava39324.m1 Manihot esculenta cassava39324.m1 I 0.663
cassava33475.m1 Manihot esculenta cassava33475.m1 I 0.663
Cucsa.303440 Cucumis sativus Cucsa.303440 I 0.663
GLYMA11G02400 Glycine max GLYMA11G02400 I 0.663
Bostr.29223s0142 Boechera stricta Bostr.29223s0142 I 0.663
Aquca_013_00221 Aquilegia coerulea Aquca_013_00221 I 0.663
30190.m011268 Ricinus communis 30190.m011268 I 0.663
POPTR_0003s13190 Populus trichocarpa POPTR_0003s13190 I 0.663
POPTR_0001s09810 Populus trichocarpa POPTR_0001s09810 I 0.663
AtMYB103 Vitis vinifera VIT_02s0025g00320 I 0.663
Cla011601 Citrullus lanatus Cla011601 I 0.663
OPUNC08G02760 Oryza punctata OPUNC08G02760 I 0.663
Pm023937 Prunus mume Pm023937 I 0.663
PRUPE_ppa019529mg Prunus persica PRUPE_ppa019529mg I 0.663
MTR_8g098860 Medicago truncatula MTR_8g098860 I 0.663
gene31835-v1.0-hybrid Fragaria vesca gene31835-v1.0-hybrid I 0.663
GSMUA_Achr10G08070_001 Musa acuminata GSMUA_Achr10G08070_001 I 0.663
Gorai.004G138300 Gossypium raimondii Gorai.004G138300 I 0.663
Solyc03g112390.2 Solanum lycopersicum Solyc03g112390.2 I 0.663
Lus10032298.g Linum usitatissimum Lus10032298.g I 0.663
Lus10024669.g Linum usitatissimum Lus10024669.g I 0.663
TCM_016332 Theobroma cacao TCM_016332 I 0.663
LPERR06G07150 Leersia perrieri LPERR06G07150 I 0.663
Carubv10021858m.g Capsella rubella Carubv10021858m.g I 0.663
MTR_5g010020 Medicago truncatula MTR_5g010020 I 0.663
PGSC0003DMG400018113 Solanum tuberosum PGSC0003DMG400018113 I 0.663
Ciclev10021161m.g Citrus clementina Ciclev10021161m.g I 0.663
Eucgr.D01819 Eucalyptus grandis Eucgr.D01819 I 0.663
PK29171.1 Cannabis sativa PK29171.1 I 0.662
chr5.CM0148.360.nc Lotus japonicus chr5.CM0148.360.nc I 0.662
AtMYB50 Arabidopsis thaliana AT1G57560 I 0.662
GSMUA_Achr8G11340_001 Musa acuminata GSMUA_Achr8G11340_001 I 0.662
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I 0.662
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I 0.662
GRMZM2G150841 Zea mays GRMZM2G150841 I 0.661
PDK_20s1606731g001 Phoenix dactylifera PDK_20s1606731g001 I 0.661
AtMYB53 Arabidopsis thaliana AT5G65230 I 0.661
AtMYB53 Arabidopsis lyrata fgenesh2_kg.8__2570__AT5G65230.1 I 0.661
Bostr.0568s0266 Boechera stricta Bostr.0568s0266 I 0.661