gene19934-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene19934-v1.0-hybrid T287347_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.772 0.817
MYB61
M07002_2.00 		Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND		 Dap-seq
OMalley et al.(2016)
MYB61_col_a 		0.662 0.710
MYB61
M07003_2.00 		Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN		 Dap-seq
OMalley et al.(2016)
MYB61_colamp_a 		0.662 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19934.1-v1.0-hybrid Myb 17 64
mrna19934.1-v1.0-hybrid Myb 70 115

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I 0.796
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I 0.796
Pm010927 Prunus mume Pm010927 I 0.791
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I 0.785
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I 0.785
MDP0000226667 Malus domestica MDP0000226667 I 0.784
TCM_033645 Theobroma cacao TCM_033645 I 0.782
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I 0.782
cassava33147.m1 Manihot esculenta cassava33147.m1 I 0.781
SapurV1A.0236s0090 Salix purpurea SapurV1A.0236s0090 I 0.773
ATY53 Arabidopsis thaliana AT3G12720 D 0.772
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.772
Carubv10015099m.g Capsella rubella Carubv10015099m.g I 0.772
TCM_005977 Theobroma cacao TCM_005977 I 0.771
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I 0.770
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I 0.770
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I 0.770
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I 0.767
Pm010847 Prunus mume Pm010847 I 0.761
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I 0.761
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I 0.758
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.755
30125.m001257 Ricinus communis 30125.m001257 I 0.754
27956.m000359 Ricinus communis 27956.m000359 I 0.752
MDP0000157506 Malus domestica MDP0000157506 I 0.750
POPTR_0001s12240 Populus trichocarpa POPTR_0001s12240 I 0.749
cassava26068.m1 Manihot esculenta cassava26068.m1 I 0.748
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I 0.748
cassava44228.m1 Manihot esculenta cassava44228.m1 I 0.747
ATY53 Vitis vinifera VIT_19s0085g00940 I 0.746
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I 0.746
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I 0.746
GLYMA08G17371 Glycine max GLYMA08G17371 I 0.741
ATY53 Arabidopsis lyrata scaffold_301452.1 I 0.739
Bra039339 Brassica rapa Bra039339 I 0.736
Bo1g138990 Brassica oleracea Bo1g138990 I 0.736
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.730
LjT35F06.10.nd Lotus japonicus LjT35F06.10.nd I 0.726
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.726
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I 0.724
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I 0.723
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I 0.723
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I 0.722
Bo5g133210 Brassica oleracea Bo5g133210 I 0.721
Bra034738 Brassica rapa Bra034738 I 0.721
MTR_2g064160 Medicago truncatula MTR_2g064160 I 0.721
mgf026023m Mimulus guttatus mgf026023m I 0.720
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I 0.717
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.715
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I 0.711
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I 0.711
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.709
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I 0.702
Bra031669 Brassica rapa Bra031669 I 0.702
Carubv10020714m.g Capsella rubella Carubv10020714m.g I 0.702
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I 0.702
Bo8g111090 Brassica oleracea Bo8g111090 I 0.702
OBART07G15150 Oryza barthii OBART07G15150 I 0.701
OMERI07G11910 Oryza meridionalis OMERI07G11910 I 0.701
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I 0.701
OS07G0497500 Oryza sativa OS07G0497500 I 0.701
OPUNC07G13970 Oryza punctata OPUNC07G13970 I 0.701
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I 0.701
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I 0.701
BGIOSGA024270 Oryza indica BGIOSGA024270 I 0.701
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I 0.701
LPERR07G12760 Leersia perrieri LPERR07G12760 I 0.701
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.699
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.699
OB01G37410 Oryza brachyantha OB01G37410 I 0.699
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.699
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.699
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.699
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.699
OS01G0709000 Oryza sativa OS01G0709000 I 0.699
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.699
F775_00835 Aegilops tauschii F775_00835 I 0.698
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.698
TRIUR3_26358 Triticum urartu TRIUR3_26358 I 0.698
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I 0.698
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.696
GSMUA_AchrUn_randomG00040_001 Musa acuminata GSMUA_AchrUn_randomG00040_001 I 0.696
Si002319m.g Setaria italica Si002319m.g I 0.696
GLYMA15G41810 Glycine max GLYMA15G41810 I 0.696
GLYMA09G33870 Glycine max GLYMA09G33870 I 0.696
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.696
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.696
GRMZM2G088783 Zea mays GRMZM2G088783 I 0.696
MLOC_18177 Hordeum vulgare MLOC_18177 I 0.696
TRIUR3_25230 Triticum urartu TRIUR3_25230 I 0.696
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I 0.696
F775_17110 Aegilops tauschii F775_17110 I 0.696
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I 0.693
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I 0.692
Bra030783 Brassica rapa Bra030783 I 0.692
ORGLA05G0025500 Oryza glaberrima ORGLA05G0025500 I 0.691
Si022113m.g Setaria italica Si022113m.g I 0.691
Ciclev10003251m.g Citrus clementina Ciclev10003251m.g I 0.691
OS05G0140100 Oryza sativa OS05G0140100 I 0.691
Pavir.J40848 Panicum virgatum Pavir.J40848 I 0.691
ORUFI05G02790 Oryza rufipogon ORUFI05G02790 I 0.691
Sb09g003100 Sorghum bicolor Sb09g003100 I 0.691
OB05G12630 Oryza brachyantha OB05G12630 I 0.691
OMERI05G02610 Oryza meridionalis OMERI05G02610 I 0.691
OLONG_008768 Oryza longistaminata OLONG_008768 I 0.691
OBART05G02690 Oryza barthii OBART05G02690 I 0.691
OGLUM05G02680 Oryza glumaepatula OGLUM05G02680 I 0.691
BGIOSGA019160 Oryza indica BGIOSGA019160 I 0.691
LPERR05G02400 Leersia perrieri LPERR05G02400 I 0.691
ONIVA05G02580 Oryza nivara ONIVA05G02580 I 0.691
OPUNC05G02540 Oryza punctata OPUNC05G02540 I 0.691
GRMZM2G127490 Zea mays GRMZM2G127490 I 0.691
GRMZM2G171781 Zea mays GRMZM2G171781 I 0.691
Aquca_003_00245 Aquilegia coerulea Aquca_003_00245 I 0.688
Pavir.J31344 Panicum virgatum Pavir.J31344 I 0.688
AMTR_s00045p00146180 Amborella trichopoda AMTR_s00045p00146180 I 0.688
VIT_14s0060g00240 Vitis vinifera VIT_14s0060g00240 I 0.688
chr5.CM0048.130.nc Lotus japonicus chr5.CM0048.130.nc I 0.684
Sb02g033830 Sorghum bicolor Sb02g033830 I 0.684
GRMZM2G172327 Zea mays GRMZM2G172327 I 0.684
Si030152m.g Setaria italica Si030152m.g I 0.684
BRADI2G36730 Brachypodium distachyon BRADI2G36730 I 0.682
GRMZM2G017520 Zea mays GRMZM2G017520 I 0.682
30054.m000809 Ricinus communis 30054.m000809 I 0.680
ONIVA01G14120 Oryza nivara ONIVA01G14120 I 0.679
LPERR01G10930 Leersia perrieri LPERR01G10930 I 0.679
GSMUA_Achr8G18730_001 Musa acuminata GSMUA_Achr8G18730_001 I 0.679
Traes_1DS_5BAD8947E Triticum aestivum Traes_1DS_5BAD8947E I 0.679
Traes_1BS_92EA1F290 Triticum aestivum Traes_1BS_92EA1F290 I 0.679
F775_28584 Aegilops tauschii F775_28584 I 0.679
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.679
ORUFI01G12800 Oryza rufipogon ORUFI01G12800 I 0.679
GSMUA_Achr7G17250_001 Musa acuminata GSMUA_Achr7G17250_001 I 0.679
ORGLA01G0100400 Oryza glaberrima ORGLA01G0100400 I 0.679
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.679
GSMUA_Achr5G18400_001 Musa acuminata GSMUA_Achr5G18400_001 I 0.679
OPUNC01G11600 Oryza punctata OPUNC01G11600 I 0.679
GSMUA_Achr11G00430_001 Musa acuminata GSMUA_Achr11G00430_001 I 0.679
Cla012793 Citrullus lanatus Cla012793 I 0.679
GSMUA_Achr2G18440_001 Musa acuminata GSMUA_Achr2G18440_001 I 0.679
Traes_1AS_1EE692FDC Triticum aestivum Traes_1AS_1EE692FDC I 0.679
OBART01G11910 Oryza barthii OBART01G11910 I 0.679
OS01G0285300 Oryza sativa OS01G0285300 I 0.679
OLONG_014417 Oryza longistaminata OLONG_014417 I 0.679
BGIOSGA001872 Oryza indica BGIOSGA001872 I 0.679
OGLUM01G13340 Oryza glumaepatula OGLUM01G13340 I 0.679
OB01G21720 Oryza brachyantha OB01G21720 I 0.679
OMERI07G19830 Oryza meridionalis OMERI07G19830 I 0.678
OMERI03G17220 Oryza meridionalis OMERI03G17220 I 0.678
TRIUR3_20789 Triticum urartu TRIUR3_20789 I 0.678
Traes_7DL_AD4395F8F Triticum aestivum Traes_7DL_AD4395F8F I 0.678
BGIOSGA010658 Oryza indica BGIOSGA010658 I 0.678
Si029872m.g Setaria italica Si029872m.g I 0.678
ONIVA02G07540 Oryza nivara ONIVA02G07540 I 0.678
Si036638m.g Setaria italica Si036638m.g I 0.678
Sb01g034270 Sorghum bicolor Sb01g034270 I 0.678
Traes_7AL_0BCF482E8 Triticum aestivum Traes_7AL_0BCF482E8 I 0.678
F775_18488 Aegilops tauschii F775_18488 I 0.678
MLOC_37780 Hordeum vulgare MLOC_37780 I 0.678
Pavir.J03230 Panicum virgatum Pavir.J03230 I 0.678
OGLUM07G23470 Oryza glumaepatula OGLUM07G23470 I 0.678
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.678
BGIOSGA026208 Oryza indica BGIOSGA026208 I 0.678
ORGLA07G0264800 Oryza glaberrima ORGLA07G0264800 I 0.678
LPERR07G20400 Leersia perrieri LPERR07G20400 I 0.678
OPUNC07G22080 Oryza punctata OPUNC07G22080 I 0.678
ORUFI07G24600 Oryza rufipogon ORUFI07G24600 I 0.678
chr1.CM0122.20.nc Lotus japonicus chr1.CM0122.20.nc I 0.677
SapurV1A.3474s0020 Salix purpurea SapurV1A.3474s0020 I 0.677
SapurV1A.1077s0040 Salix purpurea SapurV1A.1077s0040 I 0.677
chr5.CM0048.320.nd Lotus japonicus chr5.CM0048.320.nd I 0.677
Gorai.004G147600 Gossypium raimondii Gorai.004G147600 I 0.677
GLYMA02G00960 Glycine max GLYMA02G00960 I 0.677
Gorai.007G118200 Gossypium raimondii Gorai.007G118200 I 0.677
Lus10038022.g Linum usitatissimum Lus10038022.g I 0.677
orange1.1g013300m.g Citrus sinensis orange1.1g013300m.g I 0.677
Gorai.001G148500 Gossypium raimondii Gorai.001G148500 I 0.677
GLYMA03G38410 Glycine max GLYMA03G38410 I 0.677
GLYMA10G27940 Glycine max GLYMA10G27940 I 0.677
Ciclev10020144m.g Citrus clementina Ciclev10020144m.g I 0.677
SapurV1A.0321s0070 Salix purpurea SapurV1A.0321s0070 I 0.677
GLYMA19G41010 Glycine max GLYMA19G41010 I 0.677
cassava33008.m1 Manihot esculenta cassava33008.m1 I 0.677
Ca_01055 Cicer arietinum Ca_01055 I 0.677
MTR_7g110830 Medicago truncatula MTR_7g110830 I 0.677
VIT_07s0005g02480 Vitis vinifera VIT_07s0005g02480 I 0.677
TCM_004965 Theobroma cacao TCM_004965 I 0.677
POPTR_0014s10680 Populus trichocarpa POPTR_0014s10680 I 0.677
Ca_03564 Cicer arietinum Ca_03564 I 0.677
POPTR_0002s18700 Populus trichocarpa POPTR_0002s18700 I 0.677
GSMUA_Achr2G07930_001 Musa acuminata GSMUA_Achr2G07930_001 I 0.676
GSMUA_Achr9G25110_001 Musa acuminata GSMUA_Achr9G25110_001 I 0.676
AMTR_s00083p00123850 Amborella trichopoda AMTR_s00083p00123850 I 0.676
OB07G21090 Oryza brachyantha OB07G21090 I 0.676
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.674
MTR_1g085640 Medicago truncatula MTR_1g085640 I 0.674
Eucgr.B02197 Eucalyptus grandis Eucgr.B02197 I 0.674
GLYMA10G28250 Glycine max GLYMA10G28250 I 0.674
GSMUA_Achr2G01830_001 Musa acuminata GSMUA_Achr2G01830_001 I 0.673
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.673
LjSGA_022617.1 Lotus japonicus LjSGA_022617.1 I 0.673
Traes_2BS_CA02DC5B2 Triticum aestivum Traes_2BS_CA02DC5B2 I 0.673
POPTR_0010s18170 Populus trichocarpa POPTR_0010s18170 I 0.672
cassava17115.m1 Manihot esculenta cassava17115.m1 I 0.672
Bra020016 Brassica rapa Bra020016 I 0.672
cassava4659.m1 Manihot esculenta cassava4659.m1 I 0.672
GRMZM2G147698 Zea mays GRMZM2G147698 I 0.672
mgf003709m Mimulus guttatus mgf003709m I 0.671
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.671
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.670
MDP0000263595 Malus domestica MDP0000263595 I 0.668
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I 0.668
Pavir.Eb01178 Panicum virgatum Pavir.Eb01178 I 0.668
Pavir.Ea01054 Panicum virgatum Pavir.Ea01054 I 0.668
e_gw1.24.66.1 Physcomitrella patens e_gw1.24.66.1 I 0.668
Sb03g011640 Sorghum bicolor Sb03g011640 I 0.668
Si001565m.g Setaria italica Si001565m.g I 0.668
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I 0.668
fgenesh1_pg.scaffold_189000016 Physcomitrella patens fgenesh1_pg.scaffold_189000016 I 0.668
Gorai.008G133700 Gossypium raimondii Gorai.008G133700 I 0.668
GSMUA_Achr3G24580_001 Musa acuminata GSMUA_Achr3G24580_001 I 0.667
SapurV1A.0039s0080 Salix purpurea SapurV1A.0039s0080 I 0.666
PK03176.1 Cannabis sativa PK03176.1 I 0.666
Sb02g040480 Sorghum bicolor Sb02g040480 I 0.666
MDP0000653903 Malus domestica MDP0000653903 I 0.666
TCM_026853 Theobroma cacao TCM_026853 I 0.666
Cucsa.090310 Cucumis sativus Cucsa.090310 I 0.666
gene22961-v1.0-hybrid Fragaria vesca gene22961-v1.0-hybrid I 0.666
Cla005219 Citrullus lanatus Cla005219 I 0.666
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.666
Cla020303 Citrullus lanatus Cla020303 I 0.666
cassava12868.valid.m1 Manihot esculenta cassava12868.valid.m1 I 0.666
Gorai.004G183700 Gossypium raimondii Gorai.004G183700 I 0.665
Lus10038395.g Linum usitatissimum Lus10038395.g I 0.664
MYB39 Vitis vinifera VIT_02s0012g01650 I 0.664
PGSC0003DMG400018113 Solanum tuberosum PGSC0003DMG400018113 I 0.664
Solyc03g112390.2 Solanum lycopersicum Solyc03g112390.2 I 0.664
MYB26 Arabidopsis thaliana AT3G13890 I 0.663
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.663
PK22855.1 Cannabis sativa PK22855.1 I 0.663
Pm013322 Prunus mume Pm013322 I 0.663
Ca_10069 Cicer arietinum Ca_10069 I 0.663
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I 0.663
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I 0.663
MYB26 Populus trichocarpa POPTR_0001s20370 I 0.663
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.663
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.663
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.663
GLYMA13G42431 Glycine max GLYMA13G42431 I 0.663
Bra021515 Brassica rapa Bra021515 I 0.663
Lus10015608.g Linum usitatissimum Lus10015608.g I 0.663
MTR_2g099740 Medicago truncatula MTR_2g099740 I 0.663
MDP0000932804 Malus domestica MDP0000932804 I 0.663
MDP0000601420 Malus domestica MDP0000601420 I 0.663
TCM_029065 Theobroma cacao TCM_029065 I 0.663
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.663
MDP0000148894 Malus domestica MDP0000148894 I 0.663
GLYMA08G20440 Glycine max GLYMA08G20440 I 0.663
Ca_02730 Cicer arietinum Ca_02730 I 0.663
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.663
GLYMA07G01050 Glycine max GLYMA07G01050 I 0.663
Bo1g134790 Brassica oleracea Bo1g134790 I 0.663
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I 0.663
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I 0.663
Thhalv10008000m.g Eutrema salsugineum Thhalv10008000m.g I 0.662
Bostr.25494s0012 Boechera stricta Bostr.25494s0012 I 0.662
MYB61 Arabidopsis thaliana AT1G09540 D 0.662
MYB61 Arabidopsis lyrata scaffold_100991.1 I 0.662
GSMUA_Achr11G15910_001 Musa acuminata GSMUA_Achr11G15910_001 I 0.661