ATMYB65 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.3__1182__AT3G11440.1 T270761_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.909 1.000
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.909 1.000
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.909 1.000
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.861 0.902
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.861 0.902
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.808 0.837
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.808 0.837
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.808 0.837
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.738 0.783
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.738 0.783
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.738 0.783
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.737 0.793
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.727 0.761
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.727 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1182__AT3G11440.1 Myb 43 90
fgenesh2_kg.3__1182__AT3G11440.1 Myb 96 140

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK28293.1 Cannabis sativa PK28293.1 N 0.000
evm.TU.supercontig_2.121 Carica papaya evm.TU.supercontig_2.121 N 0.000
Cla005911 Citrullus lanatus Cla005911 N 0.000
Ciclev10015354m.g Citrus clementina Ciclev10015354m.g N 0.000
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N 0.000
Cucsa.026600 Cucumis sativus Cucsa.026600 N 0.000
Eucgr.G02067 Eucalyptus grandis Eucgr.G02067 N 0.000
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N 0.000
GLYMA08G09780 Glycine max GLYMA08G09780 N 0.000
GLYMA05G26790 Glycine max GLYMA05G26790 N 0.000
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N 0.000
Gorai.005G154200 Gossypium raimondii Gorai.005G154200 N 0.000
Gorai.012G183100 Gossypium raimondii Gorai.012G183100 N 0.000
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N 0.000
MDP0000826219 Malus domestica MDP0000826219 N 0.000
MDP0000320521 Malus domestica MDP0000320521 N 0.000
cassava39873.m1 Manihot esculenta cassava39873.m1 N 0.000
cassava18078.valid.m1 Manihot esculenta cassava18078.valid.m1 N 0.000
cassava18077.valid.m1 Manihot esculenta cassava18077.valid.m1 N 0.000
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 0.000
POPTR_0008s13960 Populus trichocarpa POPTR_0008s13960 N 0.000
Pm005924 Prunus mume Pm005924 N 0.000
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N 0.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 0.000
29780.m001393 Ricinus communis 29780.m001393 N 0.000
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N 0.000
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N 0.000
TCM_011212 Theobroma cacao TCM_011212 N 0.000
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.000