MYB33 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G06100 T266519_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
(Direct) (Direct)
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.861 0.902
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.861 0.902
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.861 0.902
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.831 0.859
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.831 0.859
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.831 0.859
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.756 0.793
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.756 0.793
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.756 0.793
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.754 0.783
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.741 0.750
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.741 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02306_2.00 Myb 34 81
M02306_2.00 Myb 87 131

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G06100.1 Myb 34 81
AT5G06100.1 Myb 87 131
AT5G06100.2 Myb 34 81
AT5G06100.2 Myb 87 131
AT5G06100.3 Myb 34 81
AT5G06100.3 Myb 87 131
AT5G06100.4 Myb 34 81
AT5G06100.4 Myb 87 131
AT5G06100.5 Myb 34 81
AT5G06100.5 Myb 87 131

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.889
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.889
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.886
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.886
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.882
TCM_044611 Theobroma cacao TCM_044611 I 0.865
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.865
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.865
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.861
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.861
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.861
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.861
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.861
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.861
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.860
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.859
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.859
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.859
29686.m000890 Ricinus communis 29686.m000890 I 0.859
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.849
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.849
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.848
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.847
Bo5g136570 Brassica oleracea Bo5g136570 I 0.843
Bra034842 Brassica rapa Bra034842 I 0.843
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.842
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.842
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.842
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.839
Pm016605 Prunus mume Pm016605 I 0.839
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.836
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.835
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.834
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.834
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.831
OBART01G34660 Oryza barthii OBART01G34660 I 0.831
OB01G43550 Oryza brachyantha OB01G43550 I 0.831
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.831
GAMYB Oryza sativa OS01G0812000 I 0.831
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.831
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.831
Gam1 Hordeum vulgare Q96464_HORVU D 0.831
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.831
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.831
GAM1 Oryza indica BGIOSGA004670 I 0.831
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.831
F775_28392 Aegilops tauschii F775_28392 I 0.831
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.831
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.830
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.829
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.828
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.827
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.824
Ca_21739 Cicer arietinum Ca_21739 I 0.823
Si000907m.g Setaria italica Si000907m.g I 0.822
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.821
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.821
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.819
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.816
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.816
mgf002965m Mimulus guttatus mgf002965m I 0.815
Ca_25013 Cicer arietinum Ca_25013 I 0.814
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.811
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.811
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.811
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.810
MDP0000147309 Malus domestica MDP0000147309 I 0.809
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.805
Cla013880 Citrullus lanatus Cla013880 I 0.803
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.799
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.798
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.798
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.798
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.798
Cla007782 Citrullus lanatus Cla007782 I 0.796
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.796
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.796
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.796
mgf025568m Mimulus guttatus mgf025568m I 0.796
29785.m000932 Ricinus communis 29785.m000932 I 0.796
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.795
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.795
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.792
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.784
Bo1g141040 Brassica oleracea Bo1g141040 I 0.784
Bra002042 Brassica rapa Bra002042 I 0.784
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.784
mgf010934m Mimulus guttatus mgf010934m I 0.783
mgf019173m Mimulus guttatus mgf019173m I 0.783
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.782
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.781
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.781
Cla005406 Citrullus lanatus Cla005406 I 0.781
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.779
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.779
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.778
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.777
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.777
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.776
Pm015094 Prunus mume Pm015094 I 0.775
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.775
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.775
Ca_20081 Cicer arietinum Ca_20081 I 0.772
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.772
TCM_041010 Theobroma cacao TCM_041010 I 0.772
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.770
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.770
MDP0000175835 Malus domestica MDP0000175835 I 0.768
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.767
MDP0000151688 Malus domestica MDP0000151688 I 0.765
MDP0000176798 Malus domestica MDP0000176798 I 0.765
Ca_07119 Cicer arietinum Ca_07119 I 0.761
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.761
MDP0000179306 Malus domestica MDP0000179306 I 0.761
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.760
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.760
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.758
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.756
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.756
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.756
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.755
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.754
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.753
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.753
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.747
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.747
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.747
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.747
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.747
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.746
TCM_011907 Theobroma cacao TCM_011907 I 0.745
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.745
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.745
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.744
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.744
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.743
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.743
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.743
29823.m000215 Ricinus communis 29823.m000215 I 0.742
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.741
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.741
MYB101 Arabidopsis thaliana AT2G32460 D 0.741
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.741
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.741
Bo3g026690 Brassica oleracea Bo3g026690 I 0.741
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.741
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.741
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.741
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.741
Bra021791 Brassica rapa Bra021791 I 0.741
GRMZM2G028054 Zea mays GRMZM2G028054 I 0.741
mgf020500m Mimulus guttatus mgf020500m I 0.740
Bo4g178040 Brassica oleracea Bo4g178040 I 0.740
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.740
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.739
OBART05G21120 Oryza barthii OBART05G21120 I 0.739
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.739
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.739
OS05G0490600 Oryza sativa OS05G0490600 I 0.739
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.739
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.739
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.738
MDP0000308617 Malus domestica MDP0000308617 I 0.737
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.735
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.735
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.734
PK15478.1 Cannabis sativa PK15478.1 I 0.734
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.733
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.732
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.732
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.726
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.726
Bra022888 Brassica rapa Bra022888 I 0.725
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.725
Bra012038 Brassica rapa Bra012038 I 0.724
Bra028997 Brassica rapa Bra028997 I 0.723
Bo3g021790 Brassica oleracea Bo3g021790 I 0.723
PDK_20s1383724g001 Phoenix dactylifera PDK_20s1383724g001 I 0.721
Pm011812 Prunus mume Pm011812 I 0.719
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.717
Bo4g046000 Brassica oleracea Bo4g046000 I 0.716
Bra005597 Brassica rapa Bra005597 I 0.716
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.714
Bo9g119060 Brassica oleracea Bo9g119060 I 0.714
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.714
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.714
Bra002938 Brassica rapa Bra002938 I 0.714
Bo4g076940 Brassica oleracea Bo4g076940 I 0.714
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.714
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.714
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.710
TCM_030853 Theobroma cacao TCM_030853 I 0.710
Ca_15422 Cicer arietinum Ca_15422 I 0.710
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I 0.709
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.706
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.705
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.698
PK17293.1 Cannabis sativa PK17293.1 I 0.697
GLYMA20G11040 Glycine max GLYMA20G11040 I 0.694
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.694
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.693
MYB97 Arabidopsis thaliana AT4G26930 I 0.690
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.690
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.688
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.688
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.685
Ca_06236 Cicer arietinum Ca_06236 I 0.684
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.683
Thhalv10002011m.g Eutrema salsugineum Thhalv10002011m.g I 0.682
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.680
Solyc11g072060.1 Solanum lycopersicum Solyc11g072060.1 I 0.680
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.680
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.679
F775_23034 Aegilops tauschii F775_23034 I 0.679
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.672
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.672
Si039629m.g Setaria italica Si039629m.g I 0.672
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.672
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.672
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.668
OS03G0578900 Oryza sativa OS03G0578900 I 0.668
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.668
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.668
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.668
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.668
OBART03G24120 Oryza barthii OBART03G24120 I 0.668
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.668
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.668
OB03G32840 Oryza brachyantha OB03G32840 I 0.668
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.667
Bra000531 Brassica rapa Bra000531 I 0.663
Bo3g041750 Brassica oleracea Bo3g041750 I 0.663
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.662
Bostr.6864s0293 Boechera stricta Bostr.6864s0293 I 0.661
Cagra.9104s0001 Capsella grandiflora Cagra.9104s0001 I 0.661
Carubv10025403m.g Capsella rubella Carubv10025403m.g I 0.661