CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MYB33
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT5G06100
T266519_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
(Direct)
(Direct)
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.861
0.902
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.861
0.902
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.861
0.902
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.831
0.859
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.831
0.859
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.831
0.859
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.756
0.793
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.756
0.793
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.756
0.793
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.754
0.783
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.741
0.750
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.741
0.750
For this family, TFs with SR scores >
0.661
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02306_2.00
Myb
34
81
KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHL
M02306_2.00
Myb
87
131
KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G06100.1
Myb
34
81
KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHL
AT5G06100.1
Myb
87
131
KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTR
AT5G06100.2
Myb
34
81
KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHL
AT5G06100.2
Myb
87
131
KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTR
AT5G06100.3
Myb
34
81
KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHL
AT5G06100.3
Myb
87
131
KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTR
AT5G06100.4
Myb
34
81
KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHL
AT5G06100.4
Myb
87
131
KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTR
AT5G06100.5
Myb
34
81
KGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHL
AT5G06100.5
Myb
87
131
KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTR
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
237 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy