ATMYB65 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G11440 T266436_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB65
M01076_2.00		 Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084		 (Direct) (Direct)
ATMYB65
M07076_2.00		 Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a		 (Direct) (Direct)
ATMYB65
M07077_2.00		 Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.861 0.902
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.861 0.902
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.808 0.837
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.808 0.837
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.808 0.837
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.738 0.783
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.738 0.783
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.738 0.783
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.737 0.793
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.727 0.761
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.727 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01076_2.00 Myb 43 90
M01076_2.00 Myb 96 140

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G11440.1 Myb 43 90
AT3G11440.1 Myb 96 140
AT3G11440.2 Myb 43 90
AT3G11440.2 Myb 96 140
AT3G11440.3 Myb 43 90
AT3G11440.3 Myb 96 140
AT3G11440.4 Myb 43 90
AT3G11440.4 Myb 96 140

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.909
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.909
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.909
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.909
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.903
Bra034842 Brassica rapa Bra034842 I 0.891
Bo5g136570 Brassica oleracea Bo5g136570 I 0.891
MYB33 Arabidopsis thaliana AT5G06100 D 0.861
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.842
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.842
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.841
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.841
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.841
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.841
29686.m000890 Ricinus communis 29686.m000890 I 0.841
TCM_044611 Theobroma cacao TCM_044611 I 0.841
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.841
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.839
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.839
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.837
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.834
Bo1g141040 Brassica oleracea Bo1g141040 I 0.832
Bra002042 Brassica rapa Bra002042 I 0.832
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.829
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.826
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.824
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.824
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.824
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.817
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.815
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.815
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.815
Pm016605 Prunus mume Pm016605 I 0.815
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.812
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.811
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.811
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.811
GAMYB Oryza sativa OS01G0812000 I 0.808
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.808
Gam1 Hordeum vulgare Q96464_HORVU D 0.808
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.808
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.808
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.808
OB01G43550 Oryza brachyantha OB01G43550 I 0.808
OBART01G34660 Oryza barthii OBART01G34660 I 0.808
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.808
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.808
F775_28392 Aegilops tauschii F775_28392 I 0.808
GAM1 Oryza indica BGIOSGA004670 I 0.808
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.808
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.808
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.808
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.806
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.806
mgf002965m Mimulus guttatus mgf002965m I 0.803
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.802
Si000907m.g Setaria italica Si000907m.g I 0.799
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.798
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.798
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.798
Ca_25013 Cicer arietinum Ca_25013 I 0.797
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.797
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.793
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.793
Cla007782 Citrullus lanatus Cla007782 I 0.793
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.793
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.792
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.788
MDP0000147309 Malus domestica MDP0000147309 I 0.785
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.785
Cla013880 Citrullus lanatus Cla013880 I 0.785
mgf025568m Mimulus guttatus mgf025568m I 0.784
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.784
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.784
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.784
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.784
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.782
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.782
Ca_21739 Cicer arietinum Ca_21739 I 0.781
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.779
29785.m000932 Ricinus communis 29785.m000932 I 0.779
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.778
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.776
Pm015094 Prunus mume Pm015094 I 0.776
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.776
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.775
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.775
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.774
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.767
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.766
mgf019173m Mimulus guttatus mgf019173m I 0.765
mgf010934m Mimulus guttatus mgf010934m I 0.765
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.764
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.763
Cla005406 Citrullus lanatus Cla005406 I 0.763
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.763
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.763
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.762
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.762
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.762
MDP0000175835 Malus domestica MDP0000175835 I 0.760
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.759
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.758
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.758
MDP0000151688 Malus domestica MDP0000151688 I 0.757
MDP0000176798 Malus domestica MDP0000176798 I 0.757
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.755
TCM_041010 Theobroma cacao TCM_041010 I 0.754
Ca_20081 Cicer arietinum Ca_20081 I 0.754
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.754
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.752
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.750
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.747
MDP0000179306 Malus domestica MDP0000179306 I 0.747
Ca_07119 Cicer arietinum Ca_07119 I 0.744
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.743
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.742
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.740
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.739
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.739
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.738
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.738
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.738
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.737
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.736
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.735
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.733
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.733
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.733
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.733
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.731
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.731
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.730
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.729
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.729
29823.m000215 Ricinus communis 29823.m000215 I 0.728
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.728
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.727
TCM_011907 Theobroma cacao TCM_011907 I 0.727
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.727
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.727
MYB101 Arabidopsis thaliana AT2G32460 D 0.727
Bo3g026690 Brassica oleracea Bo3g026690 I 0.727
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.727
Bra021791 Brassica rapa Bra021791 I 0.727
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.727
GRMZM2G028054 Zea mays GRMZM2G028054 I 0.727
mgf020500m Mimulus guttatus mgf020500m I 0.727
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.727
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.727
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.726
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.726
Bo4g178040 Brassica oleracea Bo4g178040 I 0.726
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.725
MDP0000308617 Malus domestica MDP0000308617 I 0.723
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.723
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.723
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.722
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.721
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.721
OS05G0490600 Oryza sativa OS05G0490600 I 0.721
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.721
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.721
OBART05G21120 Oryza barthii OBART05G21120 I 0.721
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.721
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.716
PK15478.1 Cannabis sativa PK15478.1 I 0.716
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.715
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.714
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.714
Solyc11g072060.1 Solanum lycopersicum Solyc11g072060.1 I 0.714
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.712
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.712
Bra022888 Brassica rapa Bra022888 I 0.711
Bo3g021790 Brassica oleracea Bo3g021790 I 0.711
Bra028997 Brassica rapa Bra028997 I 0.711
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.707
Bra012038 Brassica rapa Bra012038 I 0.706
Pm011812 Prunus mume Pm011812 I 0.706
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.704
PDK_20s1383724g001 Phoenix dactylifera PDK_20s1383724g001 I 0.704
Bra002938 Brassica rapa Bra002938 I 0.702
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.702
TCM_030853 Theobroma cacao TCM_030853 I 0.702
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.702
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.702
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.702
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.702
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.702
Ca_15422 Cicer arietinum Ca_15422 I 0.702
Bra005597 Brassica rapa Bra005597 I 0.697
Bo4g046000 Brassica oleracea Bo4g046000 I 0.697
Ca_06236 Cicer arietinum Ca_06236 I 0.697
Bo4g076940 Brassica oleracea Bo4g076940 I 0.697
Bo9g119060 Brassica oleracea Bo9g119060 I 0.696
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I 0.695
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.692
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.691
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.688
GLYMA20G11040 Glycine max GLYMA20G11040 I 0.682
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.681
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.681
PK17293.1 Cannabis sativa PK17293.1 I 0.679
MYB97 Arabidopsis thaliana AT4G26930 I 0.677
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.677
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.676
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.674
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.671
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.670
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.670
Ca_12826 Cicer arietinum Ca_12826 I 0.667
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.667
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.666
F775_23034 Aegilops tauschii F775_23034 I 0.666
Thhalv10002011m.g Eutrema salsugineum Thhalv10002011m.g I 0.664