Bra000531 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra000531 T267688_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB81
M07049_2.00 		Arabidopsis thaliana
VTAACNGHWWH
DWWDCNGTTAB		 Dap-seq
OMalley et al.(2016)
MYB81_col_a 		0.784 0.882
AtMYB81
M07050_2.00 		Arabidopsis thaliana
DHHNYAACBGHWWH
DWWDCVGTTRNDDH		 Dap-seq
OMalley et al.(2016)
MYB81_colamp_a 		0.784 0.882
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.675 0.753
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.675 0.753
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.672 0.753
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.672 0.753
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.672 0.753
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.663 0.753
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.663 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000531.1-P Myb 22 69
Bra000531.1-P Myb 75 120

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g041750 Brassica oleracea Bo3g041750 I 0.909
Thhalv10002011m.g Eutrema salsugineum Thhalv10002011m.g I 0.862
Bo4g076940 Brassica oleracea Bo4g076940 I 0.838
Carubv10025403m.g Capsella rubella Carubv10025403m.g I 0.806
Cagra.9104s0001 Capsella grandiflora Cagra.9104s0001 I 0.806
Bostr.6864s0293 Boechera stricta Bostr.6864s0293 I 0.797
AtMYB81 Arabidopsis lyrata Al_scaffold_0004_975 I 0.797
Bra012038 Brassica rapa Bra012038 I 0.789
AtMYB81 Arabidopsis thaliana AT2G26960 D 0.784
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.738
Bostr.29505s0026 Boechera stricta Bostr.29505s0026 I 0.734
29785.m000932 Ricinus communis 29785.m000932 I 0.725
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.724
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.723
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.722
mgf025568m Mimulus guttatus mgf025568m I 0.719
TCM_041010 Theobroma cacao TCM_041010 I 0.716
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.713
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.709
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.708
Ca_25013 Cicer arietinum Ca_25013 I 0.704
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.703
29686.m000890 Ricinus communis 29686.m000890 I 0.703
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.703
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.699
Cla007782 Citrullus lanatus Cla007782 I 0.699
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.699
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.698
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.698
TCM_044611 Theobroma cacao TCM_044611 I 0.698
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.698
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.698
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.698
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.696
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.696
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.696
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.695
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.695
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.695
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.695
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.694
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.694
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.693
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.691
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.691
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.691
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.691
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.691
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.689
MDP0000308617 Malus domestica MDP0000308617 I 0.687
MDP0000179306 Malus domestica MDP0000179306 I 0.687
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.686
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.686
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.686
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.686
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.686
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.686
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.686
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.686
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.686
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.686
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.683
mgf002965m Mimulus guttatus mgf002965m I 0.683
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.683
Pm016605 Prunus mume Pm016605 I 0.683
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.682
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.682
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.682
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.682
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.682
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.681
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.681
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.681
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.680
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.680
29823.m000215 Ricinus communis 29823.m000215 I 0.680
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.679
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.679
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.679
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.678
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.678
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.678
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.678
MDP0000175835 Malus domestica MDP0000175835 I 0.678
Bo4g046000 Brassica oleracea Bo4g046000 I 0.675
MDP0000151688 Malus domestica MDP0000151688 I 0.675
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.675
TCM_011907 Theobroma cacao TCM_011907 I 0.675
Bo3g026690 Brassica oleracea Bo3g026690 I 0.675
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.675
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.675
MDP0000176798 Malus domestica MDP0000176798 I 0.675
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.675
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.675
Bra021791 Brassica rapa Bra021791 I 0.675
MYB101 Arabidopsis thaliana AT2G32460 D 0.675
Pm015094 Prunus mume Pm015094 I 0.675
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.675
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.675
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.675
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.675
Bra005597 Brassica rapa Bra005597 I 0.675
GLYMA20G11040 Glycine max GLYMA20G11040 I 0.674
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.672
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.672
OBART01G34660 Oryza barthii OBART01G34660 I 0.672
OB01G43550 Oryza brachyantha OB01G43550 I 0.672
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.672
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.672
Gam1 Hordeum vulgare Q96464_HORVU D 0.672
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.672
GAMYB Oryza sativa OS01G0812000 I 0.672
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.672
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.672
Si000907m.g Setaria italica Si000907m.g I 0.672
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.672
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.672
F775_28392 Aegilops tauschii F775_28392 I 0.672
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.672
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.672
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.672
GAM1 Oryza indica BGIOSGA004670 I 0.672
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.671
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.671
Ca_21739 Cicer arietinum Ca_21739 I 0.671
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.671
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.671
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.671
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.670
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.670
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.667
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.666
Bo4g178040 Brassica oleracea Bo4g178040 I 0.664
Cla013880 Citrullus lanatus Cla013880 I 0.664
Ca_07119 Cicer arietinum Ca_07119 I 0.664
MYB33 Arabidopsis thaliana AT5G06100 D 0.663
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.663
Cla005406 Citrullus lanatus Cla005406 I 0.663
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.663
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.661