Carubv10025403m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10025403m.g T286440_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB81
M07049_2.00 		Arabidopsis thaliana
VTAACNGHWWH
DWWDCNGTTAB		 Dap-seq
OMalley et al.(2016)
MYB81_col_a 		0.883 0.957
AtMYB81
M07050_2.00 		Arabidopsis thaliana
DHHNYAACBGHWWH
DWWDCVGTTRNDDH		 Dap-seq
OMalley et al.(2016)
MYB81_colamp_a 		0.883 0.957
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.681 0.785
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.681 0.785
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.681 0.785
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.673 0.731
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.670 0.742
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.670 0.742
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.670 0.742
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.661 0.742
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.661 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025403m Myb 22 69
Carubv10025403m Myb 75 120

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.9104s0001 Capsella grandiflora Cagra.9104s0001 I 0.909
AtMYB81 Arabidopsis lyrata Al_scaffold_0004_975 I 0.896
AtMYB81 Arabidopsis thaliana AT2G26960 D 0.883
Bostr.6864s0293 Boechera stricta Bostr.6864s0293 I 0.874
Thhalv10002011m.g Eutrema salsugineum Thhalv10002011m.g I 0.849
Bra000531 Brassica rapa Bra000531 I 0.806
Bo3g041750 Brassica oleracea Bo3g041750 I 0.806
Bostr.29505s0026 Boechera stricta Bostr.29505s0026 I 0.800
Bo4g076940 Brassica oleracea Bo4g076940 I 0.760
Bra012038 Brassica rapa Bra012038 I 0.726
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.723
29785.m000932 Ricinus communis 29785.m000932 I 0.723
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.721
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.721
mgf025568m Mimulus guttatus mgf025568m I 0.718
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.714
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.708
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.707
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.705
29686.m000890 Ricinus communis 29686.m000890 I 0.702
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.702
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.702
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.702
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.702
TCM_041010 Theobroma cacao TCM_041010 I 0.699
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.698
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.697
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.697
Ca_07119 Cicer arietinum Ca_07119 I 0.697
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.696
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.696
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.696
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.696
TCM_044611 Theobroma cacao TCM_044611 I 0.696
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.696
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.694
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.694
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.693
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.693
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.693
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.693
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.691
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.690
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.690
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.689
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.689
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.687
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.686
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.686
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.684
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.684
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.684
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.684
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.684
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.684
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.684
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.683
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.682
mgf002965m Mimulus guttatus mgf002965m I 0.681
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.681
Pm016605 Prunus mume Pm016605 I 0.681
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.681
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.681
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.681
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.681
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.681
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.681
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.681
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.679
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.678
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.678
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.678
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.678
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.678
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.677
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.677
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.676
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.676
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.675
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.675
GLYMA20G11040 Glycine max GLYMA20G11040 I 0.674
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.674
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.673
Ca_25013 Cicer arietinum Ca_25013 I 0.671
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.670
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.670
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.670
OBART01G34660 Oryza barthii OBART01G34660 I 0.670
Si000907m.g Setaria italica Si000907m.g I 0.670
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.670
GAMYB Oryza sativa OS01G0812000 I 0.670
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.670
Gam1 Hordeum vulgare Q96464_HORVU D 0.670
OB01G43550 Oryza brachyantha OB01G43550 I 0.670
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.670
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.670
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.670
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.670
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.670
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.670
GAM1 Oryza indica BGIOSGA004670 I 0.670
F775_28392 Aegilops tauschii F775_28392 I 0.670
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.669
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.668
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.668
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.668
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.668
Si006555m.g Setaria italica Si006555m.g I 0.668
Cla005406 Citrullus lanatus Cla005406 I 0.668
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.668
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.667
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.667
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.667
Cla007782 Citrullus lanatus Cla007782 I 0.667
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.666
Ca_20081 Cicer arietinum Ca_20081 I 0.666
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.665
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.664
29823.m000215 Ricinus communis 29823.m000215 I 0.664
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.664
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.664
Cla013880 Citrullus lanatus Cla013880 I 0.663
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.663
MDP0000175835 Malus domestica MDP0000175835 I 0.663
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.662
MYB33 Arabidopsis thaliana AT5G06100 D 0.661
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.661