CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART01G08110
(
Oryza barthii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OBART01G08110
T275425_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.757
0.842
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.756
0.806
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.756
0.806
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.726
0.827
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.710
0.784
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART01G08110.1
Myb
51
97
KGNWTPEEDAILSTAVQTYNGKNWKKIAECFPDRTDVQCLHRWQKVL
OBART01G08110.1
Myb
103
149
KGPWSKEEDEIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWYNHL
OBART01G08110.1
Myb
155
199
KEAWTQEEEITLIHAHRMYGNKWAELTKFLPGRTDNSIKNHWNSS
OBART01G08110.2
Myb
64
105
KLEDEIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWYNHL
OBART01G08110.2
Myb
111
155
KEAWTQEEEITLIHAHRMYGNKWAELTKFLPGRTDNSIKNHWNSS
OBART01G08110.3
Myb
64
105
KLEDEIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWYNHL
OBART01G08110.3
Myb
111
155
KEAWTQEEEITLIHAHRMYGNKWAELTKFLPGRTDNSIKNHWNSS
Links
Other
Myb/SANT
family TFs
Other
Oryza barthii
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy