PC-MYB1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT4G32730 T266503_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00		 Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a		 (Direct) (Direct)
PC-MYB1
M07111_2.00		 Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.828 0.885
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.800 0.871
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.757 0.835
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.680 0.791
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.670 0.719
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G32730.1 Myb 35 81
AT4G32730.1 Myb 87 133
AT4G32730.1 Myb 139 183
AT4G32730.2 Myb 35 81
AT4G32730.2 Myb 87 133
AT4G32730.2 Myb 139 183
AT4G32730.3 Myb 35 81
AT4G32730.3 Myb 87 133
AT4G32730.3 Myb 139 183
AT4G32730.4 Myb 35 81
AT4G32730.4 Myb 87 133
AT4G32730.4 Myb 139 183
AT4G32730.5 Myb 35 81
AT4G32730.5 Myb 87 133
AT4G32730.5 Myb 139 183

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.909
Bra034531 Brassica rapa Bra034531 I 0.894
Bo3g171130 Brassica oleracea Bo3g171130 I 0.894
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.893
Bo7g115810 Brassica oleracea Bo7g115810 I 0.882
Bra011376 Brassica rapa Bra011376 I 0.878
Bo1g010040 Brassica oleracea Bo1g010040 I 0.878
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.853
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.853
Bra037045 Brassica rapa Bra037045 I 0.852
29794.m003447 Ricinus communis 29794.m003447 I 0.844
Ca_14925 Cicer arietinum Ca_14925 I 0.840
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.835
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.834
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.831
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.829
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.829
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.828
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.826
MDP0000295807 Malus domestica MDP0000295807 I 0.825
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.816
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.815
TCM_047091 Theobroma cacao TCM_047091 I 0.815
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.813
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.813
Cla022565 Citrullus lanatus Cla022565 I 0.813
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.813
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.813
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.813
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.811
MDP0000179225 Malus domestica MDP0000179225 I 0.811
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.810
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.809
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.809
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.800
PK12011.1 Cannabis sativa PK12011.1 D 0.800
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.795
Cla023357 Citrullus lanatus Cla023357 I 0.795
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.795
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.790
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.785
Pm005124 Prunus mume Pm005124 I 0.781
mgf008601m Mimulus guttatus mgf008601m I 0.781
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.774
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.773
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.773
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.771
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.771
Ca_01884 Cicer arietinum Ca_01884 I 0.766
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.764
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.763
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.763
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.759
Bra008956 Brassica rapa Bra008956 I 0.757
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.757
Bo9g171130 Brassica oleracea Bo9g171130 I 0.757
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.757
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.757
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.756
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.756
OBART01G08110 Oryza barthii OBART01G08110 I 0.756
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.756
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.756
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.754
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.754
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.750
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.750
OB12G16480 Oryza brachyantha OB12G16480 I 0.750
OS12G0238000 Oryza sativa OS12G0238000 I 0.750
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.750
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.748
mgf006384m Mimulus guttatus mgf006384m I 0.745
F775_05724 Aegilops tauschii F775_05724 I 0.743
OB01G18340 Oryza brachyantha OB01G18340 I 0.739
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.739
Bo3g007070 Brassica oleracea Bo3g007070 I 0.737
Bo3g179620 Brassica oleracea Bo3g179620 I 0.737
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.735
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.734
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.732
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.731
PK22174.1 Cannabis sativa PK22174.1 I 0.728
Bra006102 Brassica rapa Bra006102 I 0.725
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.721
MYB3R-2 Oryza sativa OS01G0841500 I 0.721
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.721
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.718
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.716
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.712
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.711
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.710
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.710
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.705
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.699
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.699
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.699
Si000842m.g Setaria italica Si000842m.g I 0.699
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.699
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.699
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.697
Pm018007 Prunus mume Pm018007 I 0.696
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.695
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.694
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.693
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.693
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.693
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.692
Cla018173 Citrullus lanatus Cla018173 I 0.691
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.691
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.688
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.687
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.687
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.686
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.683
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.682
Pm002704 Prunus mume Pm002704 I 0.682
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.682
Bra034067 Brassica rapa Bra034067 I 0.680
Bo1g144510 Brassica oleracea Bo1g144510 I 0.680
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.680
OBART05G19200 Oryza barthii OBART05G19200 I 0.680
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.680
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.680
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.680
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.678
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.678
29846.m000184 Ricinus communis 29846.m000184 I 0.676
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.676
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.676
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.675
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.675
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.675
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.675
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.675
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.674
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.674
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.673
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.673
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.671
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.670
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.670
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.669
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.669
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.668
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.667
Si021484m.g Setaria italica Si021484m.g I 0.666
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.666
MYB3R-4 Vitis vinifera VIT_04s0008g03790 I 0.665
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.664
TCM_005402 Theobroma cacao TCM_005402 I 0.663
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.662
TCM_021936 Theobroma cacao TCM_021936 I 0.662
e_gw1.6.395.1 Monosiga brevicollis e_gw1.6.395.1 I 0.662