CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc08g068320.2
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc08g068320.2
T280207_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.857
0.935
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.834
0.878
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.834
0.878
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.813
0.906
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.755
0.827
Q948S4_TOBAC
M11073_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBB_01
0.687
0.755
Q948S6_TOBAC
M11075_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA1_01
0.680
0.791
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.665
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc08g068320.2.1
Myb
36
82
KGQWTPEEDDTLCKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVL
Solyc08g068320.2.1
Myb
88
134
KGPWSKEEDEVIGELVKKYGPKKWSTIAQHLPGRIGKQCRERWHNHL
Solyc08g068320.2.1
Myb
140
184
KEAWTQEEEMTLVHAHQIYGNKWAELTKFLPGRTDNAIKNHWNSS
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_14925
Cicer arietinum
Ca_14925
I
0.883
MTR_1g026870
Medicago truncatula
MTR_1g026870
I
0.866
Q948S5_TOBAC
Nicotiana tabacum
Q948S5_TOBAC
D
0.857
evm.TU.supercontig_78.76
Carica papaya
evm.TU.supercontig_78.76
I
0.842
Ciclev10007316m.g
Citrus clementina
Ciclev10007316m.g
I
0.837
PC-MYB1
Arabidopsis lyrata
fgenesh2_kg.7__866__AT4G32730.2
I
0.834
Bostr.7867s1124
Boechera stricta
Bostr.7867s1124
I
0.834
PC-MYB1
Arabidopsis thaliana
AT4G32730
D
0.834
MTR_3g110028
Medicago truncatula
MTR_3g110028
I
0.833
MDP0000179225
Malus domestica
MDP0000179225
I
0.832
Bra011376
Brassica rapa
Bra011376
I
0.829
Bo1g010040
Brassica oleracea
Bo1g010040
I
0.829
Bra034531
Brassica rapa
Bra034531
I
0.828
Bo3g171130
Brassica oleracea
Bo3g171130
I
0.828
VIT_11s0016g03750
Vitis vinifera
VIT_11s0016g03750
I
0.827
Gorai.010G110000
Gossypium raimondii
Gorai.010G110000
I
0.826
Bo7g115810
Brassica oleracea
Bo7g115810
I
0.826
POPTR_0006s25840
Populus trichocarpa
POPTR_0006s25840
I
0.825
SapurV1A.0283s0180
Salix purpurea
SapurV1A.0283s0180
I
0.825
Eucgr.C02893
Eucalyptus grandis
Eucgr.C02893
I
0.825
MDP0000295807
Malus domestica
MDP0000295807
I
0.825
POPTR_0018s00710
Populus trichocarpa
POPTR_0018s00710
I
0.825
TCM_047091
Theobroma cacao
TCM_047091
I
0.825
Cucsa.161430
Cucumis sativus
Cucsa.161430
I
0.825
Cla022565
Citrullus lanatus
Cla022565
I
0.825
LjT22I05.60.nd
Lotus japonicus
LjT22I05.60.nd
I
0.823
gene08793-v1.0-hybrid
Fragaria vesca
gene08793-v1.0-hybrid
I
0.822
PRUPE_ppa000676mg
Prunus persica
PRUPE_ppa000676mg
I
0.822
VIT_04s0008g03780
Vitis vinifera
VIT_04s0008g03780
I
0.821
PK12011.1
Cannabis sativa
PK12011.1
D
0.813
29794.m003447
Ricinus communis
29794.m003447
I
0.812
GLYMA17G26240
Glycine max
GLYMA17G26240
I
0.810
Cucsa.311420
Cucumis sativus
Cucsa.311420
I
0.805
Cla023357
Citrullus lanatus
Cla023357
I
0.805
Gorai.009G051000
Gossypium raimondii
Gorai.009G051000
I
0.802
SapurV1A.0446s0220
Salix purpurea
SapurV1A.0446s0220
I
0.796
GLYMA06G08660
Glycine max
GLYMA06G08660
I
0.794
GLYMA04G08550
Glycine max
GLYMA04G08550
I
0.794
Lus10022136.g
Linum usitatissimum
Lus10022136.g
I
0.793
GLYMA14G21523
Glycine max
GLYMA14G21523
I
0.791
Pm005124
Prunus mume
Pm005124
I
0.791
Bra037045
Brassica rapa
Bra037045
I
0.790
GSMUA_Achr2G19890_001
Musa acuminata
GSMUA_Achr2G19890_001
I
0.787
mgf008601m
Mimulus guttatus
mgf008601m
I
0.785
Carubv10004063m.g
Capsella rubella
Carubv10004063m.g
I
0.778
Cagra.4093s0003
Capsella grandiflora
Cagra.4093s0003
I
0.778
Pavir.Eb00149
Panicum virgatum
Pavir.Eb00149
I
0.775
Pavir.Ea00087
Panicum virgatum
Pavir.Ea00087
I
0.775
Ca_01884
Cicer arietinum
Ca_01884
I
0.772
OS12G0238000
Oryza sativa
OS12G0238000
I
0.769
Aquca_001_00435
Aquilegia coerulea
Aquca_001_00435
I
0.769
ORGLA12G0066300
Oryza glaberrima
ORGLA12G0066300
I
0.769
OB12G16480
Oryza brachyantha
OB12G16480
I
0.769
Gorai.001G028200
Gossypium raimondii
Gorai.001G028200
I
0.767
Traes_1BS_403DBC53C
Triticum aestivum
Traes_1BS_403DBC53C
I
0.767
mgf006384m
Mimulus guttatus
mgf006384m
I
0.762
TRAES3BF049800070CFD_g
Triticum aestivum
TRAES3BF049800070CFD_g
I
0.761
Traes_3AS_09025DA2E
Triticum aestivum
Traes_3AS_09025DA2E
I
0.761
Thhalv10024320m.g
Eutrema salsugineum
Thhalv10024320m.g
I
0.759
OB01G18340
Oryza brachyantha
OB01G18340
I
0.757
PK22174.1
Cannabis sativa
PK22174.1
I
0.756
Cagra.7526s0003
Capsella grandiflora
Cagra.7526s0003
I
0.755
Bostr.20055s0087
Boechera stricta
Bostr.20055s0087
I
0.755
MYB3R-4
Arabidopsis lyrata
fgenesh2_kg.6__1121__AT5G11510.1
I
0.755
Bo9g171130
Brassica oleracea
Bo9g171130
I
0.755
MYB3R4
Arabidopsis thaliana
AT5G11510
D
0.755
Carubv10000155m.g
Capsella rubella
Carubv10000155m.g
I
0.755
Bra008956
Brassica rapa
Bra008956
I
0.755
OBART01G08110
Oryza barthii
OBART01G08110
I
0.754
ONIVA01G10670
Oryza nivara
ONIVA01G10670
I
0.754
OGLUM01G09290
Oryza glumaepatula
OGLUM01G09290
I
0.754
OLONG_011886
Oryza longistaminata
OLONG_011886
I
0.754
OPUNC01G08000
Oryza punctata
OPUNC01G08000
I
0.750
OPUNC01G07980
Oryza punctata
OPUNC01G07980
I
0.750
OMERI01G08160
Oryza meridionalis
OMERI01G08160
I
0.747
F775_05724
Aegilops tauschii
F775_05724
I
0.741
Traes_1AS_61D017632
Triticum aestivum
Traes_1AS_61D017632
I
0.738
GSMUA_Achr10G14840_001
Musa acuminata
GSMUA_Achr10G14840_001
I
0.735
ORGLA01G0073200
Oryza glaberrima
ORGLA01G0073200
I
0.734
Aquca_013_00366
Aquilegia coerulea
Aquca_013_00366
I
0.733
TRIUR3_24658
Triticum urartu
TRIUR3_24658
I
0.732
Thhalv10012583m.g
Eutrema salsugineum
Thhalv10012583m.g
I
0.729
Bo3g179620
Brassica oleracea
Bo3g179620
I
0.729
Bo3g007070
Brassica oleracea
Bo3g007070
I
0.729
Pavir.J07395
Panicum virgatum
Pavir.J07395
I
0.721
ORGLA01G0306500
Oryza glaberrima
ORGLA01G0306500
I
0.718
MYB3R-2
Oryza sativa
OS01G0841500
I
0.718
OGLUM01G40780
Oryza glumaepatula
OGLUM01G40780
I
0.718
Bra006102
Brassica rapa
Bra006102
I
0.717
Cla018173
Citrullus lanatus
Cla018173
I
0.717
MLOC_10556
Hordeum vulgare
MLOC_10556
I
0.714
Cucsa.175460
Cucumis sativus
Cucsa.175460
I
0.711
Gorai.006G172800
Gossypium raimondii
Gorai.006G172800
I
0.709
PDK_20s1371143g001
Phoenix dactylifera
PDK_20s1371143g001
I
0.708
e_gw1.36.4.1
Physcomitrella patens
e_gw1.36.4.1
I
0.704
Cagra.0487s0012
Capsella grandiflora
Cagra.0487s0012
I
0.703
BRADI2G31887
Brachypodium distachyon
BRADI2G31887
I
0.703
Carubv10000643m.g
Capsella rubella
Carubv10000643m.g
I
0.703
Thhalv10013211m.g
Eutrema salsugineum
Thhalv10013211m.g
I
0.703
Pm002704
Prunus mume
Pm002704
I
0.702
Sb03g039470
Sorghum bicolor
Sb03g039470
I
0.702
PRUPE_ppa003208mg
Prunus persica
PRUPE_ppa003208mg
I
0.702
gene18416-v1.0-hybrid
Fragaria vesca
gene18416-v1.0-hybrid
I
0.701
e_gw1.120.1.1
Physcomitrella patens
e_gw1.120.1.1
I
0.698
AMTR_s00109p00061950
Amborella trichopoda
AMTR_s00109p00061950
I
0.698
Bostr.22252s0130
Boechera stricta
Bostr.22252s0130
I
0.697
Si000842m.g
Setaria italica
Si000842m.g
I
0.696
Pavir.Ea03349
Panicum virgatum
Pavir.Ea03349
I
0.696
Pavir.Eb03676
Panicum virgatum
Pavir.Eb03676
I
0.696
Thhalv10020579m.g
Eutrema salsugineum
Thhalv10020579m.g
I
0.695
chr1.CM0147.520.nd
Lotus japonicus
chr1.CM0147.520.nd
I
0.694
OPUNC05G16800
Oryza punctata
OPUNC05G16800
I
0.693
Solyc11g071300.1
Solanum lycopersicum
Solyc11g071300.1
I
0.693
GRMZM2G081919
Zea mays
GRMZM2G081919
I
0.691
MYB3R-4
Vitis vinifera
VIT_04s0008g03790
I
0.691
MTR_7g061330
Medicago truncatula
MTR_7g061330
I
0.690
MTR_7g461410
Medicago truncatula
MTR_7g461410
I
0.690
Ciclev10011452m.g
Citrus clementina
Ciclev10011452m.g
I
0.689
fgenesh1_pg.C_scaffold_3000839
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000839
I
0.689
MYB3R-3
Arabidopsis thaliana
AT3G09370
I
0.689
POPTR_0006s08570
Populus trichocarpa
POPTR_0006s08570
I
0.689
orange1.1g009402m.g
Citrus sinensis
orange1.1g009402m.g
I
0.689
SapurV1A.0001s1810
Salix purpurea
SapurV1A.0001s1810
I
0.689
Q948S4_TOBAC
Nicotiana tabacum
Q948S4_TOBAC
D
0.687
cassava9078.m1
Manihot esculenta
cassava9078.m1
I
0.687
Cagra.2515s0028
Capsella grandiflora
Cagra.2515s0028
I
0.685
Carubv10013377m.g
Capsella rubella
Carubv10013377m.g
I
0.685
29846.m000184
Ricinus communis
29846.m000184
I
0.683
Bostr.6251s0040
Boechera stricta
Bostr.6251s0040
I
0.683
Gorai.001G249400
Gossypium raimondii
Gorai.001G249400
I
0.682
TCM_021936
Theobroma cacao
TCM_021936
I
0.682
mgf019610m
Mimulus guttatus
mgf019610m
I
0.681
Q948S6_TOBAC
Nicotiana tabacum
Q948S6_TOBAC
D
0.680
ORUFI05G20390
Oryza rufipogon
ORUFI05G20390
I
0.679
BGIOSGA017917
Oryza indica
BGIOSGA017917
I
0.679
ONIVA05G20060
Oryza nivara
ONIVA05G20060
I
0.679
OBART05G19200
Oryza barthii
OBART05G19200
I
0.679
GLYMA18G39740
Glycine max
GLYMA18G39740
I
0.677
GLYMA07G15820
Glycine max
GLYMA07G15820
I
0.677
Solyc08g080580.2
Solanum lycopersicum
Solyc08g080580.2
I
0.677
Pm018007
Prunus mume
Pm018007
I
0.676
AMTR_s00009p00263240
Amborella trichopoda
AMTR_s00009p00263240
I
0.675
VIT_08s0007g00360
Vitis vinifera
VIT_08s0007g00360
I
0.675
Solyc09g010820.2
Solanum lycopersicum
Solyc09g010820.2
I
0.675
GSMUA_Achr10G26610_001
Musa acuminata
GSMUA_Achr10G26610_001
I
0.675
PGSC0003DMG400008908
Solanum tuberosum
PGSC0003DMG400008908
I
0.675
PGSC0003DMG400018588
Solanum tuberosum
PGSC0003DMG400018588
I
0.674
Bo1g144510
Brassica oleracea
Bo1g144510
I
0.672
PK11664.1
Cannabis sativa
PK11664.1
I
0.672
Bra034067
Brassica rapa
Bra034067
I
0.672
GSMUA_Achr6G05030_001
Musa acuminata
GSMUA_Achr6G05030_001
I
0.671
Lus10025351.g
Linum usitatissimum
Lus10025351.g
I
0.671
F775_10106
Aegilops tauschii
F775_10106
I
0.671
Lus10024394.g
Linum usitatissimum
Lus10024394.g
I
0.671
SELMODRAFT_411844
Selaginella moellendorffii
SELMODRAFT_411844
I
0.669
Traes_1BL_C25B5DDB4
Triticum aestivum
Traes_1BL_C25B5DDB4
I
0.669
Traes_1DL_B26A733D4
Triticum aestivum
Traes_1DL_B26A733D4
I
0.666
LPERR01G31650
Leersia perrieri
LPERR01G31650
I
0.666
ATMYB3R5
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6000124
I
0.665
MYB3R5
Arabidopsis thaliana
AT5G02320
D
0.665
cassava12645.valid.m1
Manihot esculenta
cassava12645.valid.m1
I
0.664
OLONG_011208
Oryza longistaminata
OLONG_011208
I
0.663
TRIUR3_29290
Triticum urartu
TRIUR3_29290
I
0.663
MDP0000219581
Malus domestica
MDP0000219581
I
0.662
Bo9g184660
Brassica oleracea
Bo9g184660
I
0.661
Aquca_003_00045
Aquilegia coerulea
Aquca_003_00045
I
0.661
Bra009597
Brassica rapa
Bra009597
I
0.661