Bostr.22252s0130 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.22252s0130 T285759_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.768 0.893
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.691 0.786
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.664 0.779
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.664 0.736
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.664 0.736
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.22252s0130.1.p Myb 82 128
Bostr.22252s0130.1.p Myb 134 180
Bostr.22252s0130.1.p Myb 186 231
Bostr.22252s0130.2.p Myb 79 125
Bostr.22252s0130.2.p Myb 131 177
Bostr.22252s0130.2.p Myb 183 228

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.859
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.846
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.838
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.838
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.837
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.837
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.833
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.831
Pm002704 Prunus mume Pm002704 I 0.830
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.830
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.830
29846.m000184 Ricinus communis 29846.m000184 I 0.829
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.824
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.822
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.822
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.819
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.811
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.811
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.810
TCM_021936 Theobroma cacao TCM_021936 I 0.810
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.806
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.806
Bo1g144510 Brassica oleracea Bo1g144510 I 0.806
Bra034067 Brassica rapa Bra034067 I 0.806
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.804
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.803
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.801
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.801
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.791
MDP0000219581 Malus domestica MDP0000219581 I 0.791
Bra029762 Brassica rapa Bra029762 I 0.788
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.787
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.787
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.786
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.786
Si000842m.g Setaria italica Si000842m.g I 0.786
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.786
Bo5g139340 Brassica oleracea Bo5g139340 I 0.783
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.783
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.777
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.776
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.774
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.774
Cla018173 Citrullus lanatus Cla018173 I 0.773
PK11664.1 Cannabis sativa PK11664.1 I 0.773
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.771
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.768
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.768
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.764
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.759
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.759
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.755
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.747
MYB3R-2 Oryza sativa OS01G0841500 I 0.747
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.747
mgf019610m Mimulus guttatus mgf019610m I 0.744
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.744
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.744
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.742
Bra009597 Brassica rapa Bra009597 I 0.741
Bo9g184660 Brassica oleracea Bo9g184660 I 0.731
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.724
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.713
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.707
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.706
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.706
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.703
Ca_14925 Cicer arietinum Ca_14925 I 0.703
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.702
Cla022565 Citrullus lanatus Cla022565 I 0.702
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.702
Bo3g062020 Brassica oleracea Bo3g062020 N 0.702
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.702
TCM_047091 Theobroma cacao TCM_047091 I 0.700
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.700
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.700
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.700
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.697
Cla023357 Citrullus lanatus Cla023357 I 0.697
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.697
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.696
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.696
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.691
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.690
Ca_21127 Cicer arietinum Ca_21127 I 0.690
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.688
29794.m003447 Ricinus communis 29794.m003447 I 0.687
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.685
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.685
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.685
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.684
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.680
MDP0000179225 Malus domestica MDP0000179225 I 0.679
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.678
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.677
OBART05G19200 Oryza barthii OBART05G19200 I 0.676
Pm005124 Prunus mume Pm005124 I 0.676
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.676
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.676
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.676
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.676
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.675
Bra001311 Brassica rapa Bra001311 N 0.674
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.674
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.673
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.673
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.673
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.673
OB01G45570 Oryza brachyantha OB01G45570 I 0.672
MDP0000295807 Malus domestica MDP0000295807 I 0.672
Bra011376 Brassica rapa Bra011376 I 0.671
Bo1g010040 Brassica oleracea Bo1g010040 I 0.671
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.671
Bo7g115810 Brassica oleracea Bo7g115810 I 0.670
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.670
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.670
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.670
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.669
Si021484m.g Setaria italica Si021484m.g I 0.669
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.669
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.666
Ca_01884 Cicer arietinum Ca_01884 I 0.665
PK12011.1 Cannabis sativa PK12011.1 D 0.664
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.664
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.664
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.664
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.663
OS12G0238000 Oryza sativa OS12G0238000 I 0.663
OB12G16480 Oryza brachyantha OB12G16480 I 0.663