Ciclev10011452m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10011452m.g T286538_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.781 0.886
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.698 0.786
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.693 0.743
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.693 0.743
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.675 0.764
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011446m Myb 60 106
Ciclev10011446m Myb 112 158
Ciclev10011446m Myb 164 209
Ciclev10011452m Myb 60 106
Ciclev10011452m Myb 112 158
Ciclev10011452m Myb 164 209

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.909
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.901
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.901
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.887
Pm002704 Prunus mume Pm002704 I 0.874
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.874
29846.m000184 Ricinus communis 29846.m000184 I 0.872
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.863
TCM_021936 Theobroma cacao TCM_021936 I 0.854
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.854
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.849
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.848
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.848
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.848
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.847
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.847
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.844
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.842
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.841
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.841
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.841
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.839
Bo1g144510 Brassica oleracea Bo1g144510 I 0.838
Bra034067 Brassica rapa Bra034067 I 0.838
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.837
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.833
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.828
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.828
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.827
MDP0000219581 Malus domestica MDP0000219581 I 0.823
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.822
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.822
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.819
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.819
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.817
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.817
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.816
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.816
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.812
Si000842m.g Setaria italica Si000842m.g I 0.811
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.811
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.811
Bo5g139340 Brassica oleracea Bo5g139340 I 0.804
Bra029762 Brassica rapa Bra029762 I 0.803
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.800
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.799
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.798
MYB3R-2 Oryza sativa OS01G0841500 I 0.798
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.798
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.789
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.789
mgf019610m Mimulus guttatus mgf019610m I 0.789
PK11664.1 Cannabis sativa PK11664.1 I 0.788
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.785
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.783
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.781
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.781
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.779
Cla018173 Citrullus lanatus Cla018173 I 0.778
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.763
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.751
Bra009597 Brassica rapa Bra009597 I 0.747
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.746
Bo9g184660 Brassica oleracea Bo9g184660 I 0.737
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.731
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.726
Bo3g062020 Brassica oleracea Bo3g062020 N 0.725
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.725
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.722
Ca_21127 Cicer arietinum Ca_21127 I 0.720
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.720
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.719
OB01G45570 Oryza brachyantha OB01G45570 I 0.717
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.711
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.707
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.706
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.706
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.706
OBART05G19200 Oryza barthii OBART05G19200 I 0.706
Ca_14925 Cicer arietinum Ca_14925 I 0.705
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.703
Bra001311 Brassica rapa Bra001311 N 0.700
29794.m003447 Ricinus communis 29794.m003447 I 0.699
PK12011.1 Cannabis sativa PK12011.1 D 0.698
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.698
MDP0000295807 Malus domestica MDP0000295807 I 0.696
Cla023357 Citrullus lanatus Cla023357 I 0.695
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.695
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.694
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.694
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.694
F775_12121 Aegilops tauschii F775_12121 N 0.694
Bra034531 Brassica rapa Bra034531 I 0.693
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.693
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.693
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.693
Bo3g171130 Brassica oleracea Bo3g171130 I 0.693
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.692
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.690
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.690
MDP0000179225 Malus domestica MDP0000179225 I 0.689
Si021484m.g Setaria italica Si021484m.g I 0.689
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.689
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.689
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.688
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.688
TCM_047091 Theobroma cacao TCM_047091 I 0.686
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.686
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.686
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.686
Cla022565 Citrullus lanatus Cla022565 I 0.686
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.686
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.686
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.685
OS05G0459000 Oryza sativa OS05G0459000 I 0.684
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.684
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.683
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.683
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.683
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.683
Bo7g115810 Brassica oleracea Bo7g115810 I 0.682
Bo1g010040 Brassica oleracea Bo1g010040 I 0.680
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.680
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.677
OBART01G08110 Oryza barthii OBART01G08110 I 0.677
OB12G16480 Oryza brachyantha OB12G16480 I 0.677
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.677
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.677
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.677
OS12G0238000 Oryza sativa OS12G0238000 I 0.677
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.675
Bra011376 Brassica rapa Bra011376 I 0.675
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.675
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.674
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.673
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.672
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.671
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.671
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.671
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.670
F775_05724 Aegilops tauschii F775_05724 I 0.670
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.670
OB05G26770 Oryza brachyantha OB05G26770 N 0.667
OB01G18340 Oryza brachyantha OB01G18340 I 0.666
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.666
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.666
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.665
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.664
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.663
Pm005124 Prunus mume Pm005124 I 0.662