MYB3R4 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G11510 T266528_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R4
M07125_2.00		 Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.783 0.871
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.757 0.835
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.757 0.835
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.727 0.842
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G11510.1 Myb 29 75
AT5G11510.1 Myb 81 127
AT5G11510.1 Myb 133 177
AT5G11510.2 Myb 29 75
AT5G11510.2 Myb 81 127
AT5G11510.2 Myb 133 177
AT5G11510.3 Myb 29 75
AT5G11510.3 Myb 81 127
AT5G11510.3 Myb 133 177
AT5G11510.4 Myb 29 75
AT5G11510.4 Myb 81 127
AT5G11510.4 Myb 133 177
AT5G11510.5 Myb 29 75
AT5G11510.5 Myb 81 127
AT5G11510.5 Myb 133 177

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g171130 Brassica oleracea Bo9g171130 I 0.901
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.893
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.893
Bra008956 Brassica rapa Bra008956 I 0.885
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.870
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.870
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.845
Bo3g007070 Brassica oleracea Bo3g007070 I 0.839
Bo3g179620 Brassica oleracea Bo3g179620 I 0.839
Bra006102 Brassica rapa Bra006102 I 0.810
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.809
Cla022565 Citrullus lanatus Cla022565 I 0.806
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.806
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.806
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.806
29794.m003447 Ricinus communis 29794.m003447 I 0.804
TCM_047091 Theobroma cacao TCM_047091 I 0.804
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.804
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.804
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.800
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.798
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.796
Cla023357 Citrullus lanatus Cla023357 I 0.796
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.792
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.787
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.785
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.783
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.780
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.780
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.774
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.773
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.767
MDP0000295807 Malus domestica MDP0000295807 I 0.767
Bo7g115810 Brassica oleracea Bo7g115810 I 0.766
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.765
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.763
Ca_14925 Cicer arietinum Ca_14925 I 0.763
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.763
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.763
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.762
MDP0000179225 Malus domestica MDP0000179225 I 0.761
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.757
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.757
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.755
Pm005124 Prunus mume Pm005124 I 0.755
Ca_01884 Cicer arietinum Ca_01884 I 0.754
mgf008601m Mimulus guttatus mgf008601m I 0.753
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.747
Bra034531 Brassica rapa Bra034531 I 0.746
Bo3g171130 Brassica oleracea Bo3g171130 I 0.746
Bra037045 Brassica rapa Bra037045 I 0.742
Bra011376 Brassica rapa Bra011376 I 0.739
Bo1g010040 Brassica oleracea Bo1g010040 I 0.739
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.735
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.733
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.732
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.731
PK22174.1 Cannabis sativa PK22174.1 I 0.730
PK12011.1 Cannabis sativa PK12011.1 D 0.727
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.718
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.718
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.718
mgf006384m Mimulus guttatus mgf006384m I 0.718
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.718
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.713
OS12G0238000 Oryza sativa OS12G0238000 I 0.712
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.712
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.712
OB12G16480 Oryza brachyantha OB12G16480 I 0.712
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.712
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.711
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.710
F775_05724 Aegilops tauschii F775_05724 I 0.710
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.710
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.710
OBART01G08110 Oryza barthii OBART01G08110 I 0.710
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.708
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.703
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.702
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.702
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.701
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.701
OB01G18340 Oryza brachyantha OB01G18340 I 0.700
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.694
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.691
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.683
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.683
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.679
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.676
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.670
Cla018173 Citrullus lanatus Cla018173 I 0.668
MYB3R-2 Oryza sativa OS01G0841500 I 0.667
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.667
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.667
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.662
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.662
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.662
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.662
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.661
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.661