VIT_17s0000g00270 (Vitis vinifera)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 VIT_17s0000g00270 T282080_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.736 0.830
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.736 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_17s0000g00270.t01 Myb 35 103

Links

Other Myb/SANT family TFs
Other Vitis vinifera TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.776
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.776
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I 0.776
Bra021860 Brassica rapa Bra021860 I 0.776
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.776
Bo4g182020 Brassica oleracea Bo4g182020 I 0.776
Bo4g043600 Brassica oleracea Bo4g043600 I 0.776
Bra005486 Brassica rapa Bra005486 I 0.776
Pm024597 Prunus mume Pm024597 I 0.760
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.753
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.736
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.736
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I 0.736
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.736
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.736
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.736
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.736
mgf009760m Mimulus guttatus mgf009760m I 0.736
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.736
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I 0.736
30128.m008552 Ricinus communis 30128.m008552 I 0.736
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.736
ASR3 Arabidopsis thaliana AT2G33550 D 0.736
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I 0.728
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.728
Cla001502 Citrullus lanatus Cla001502 I 0.687
PK25885.1 Cannabis sativa PK25885.1 I 0.671