evm.TU.supercontig_108.29 (Carica papaya)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 evm.TU.supercontig_108.29 T287032_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW

WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.733 0.827
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR

YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.733 0.827
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_108.29 Myb 232 266
evm.model.supercontig_108.29 Myb 272 317

Links

Other Myb/SANT family TFs
Other Carica papaya TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29917.m001977 Ricinus communis 29917.m001977 I 0.669
Bo2g144970 Brassica oleracea Bo2g144970 I 0.685
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.763
Bra025299 Brassica rapa Bra025299 I 0.731
Bra033027 Brassica rapa Bra033027 I 0.685
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.763
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.763
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.680
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.697
Cla010586 Citrullus lanatus Cla010586 I 0.668
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.710
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.680
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.761
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.680
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.720
MDP0000199939 Malus domestica MDP0000199939 I 0.672
mg025334m Mimulus guttatus mg025334m I 0.699
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.733
MYB118 Arabidopsis thaliana AT3G27785 D 0.733
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.697
Pm015681 Prunus mume Pm015681 I 0.677
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.686
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.664
TCM_016909 Theobroma cacao TCM_016909 I 0.811
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.763
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.663