CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_108.29
(
Carica papaya
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
evm.TU.supercontig_108.29
T287032_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.733
0.827
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.733
0.827
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_108.29
Myb
232
266
PQLVGRFGTKKWSQIAKMLRGRVGKQCRERWHNHL
evm.model.supercontig_108.29
Myb
272
317
KEEWTEEEDLILINAHQEIGNRWAEMTRRLPGRSENTIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Carica papaya
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_016909
Theobroma cacao
TCM_016909
I
0.811
Bostr.0556s0457
Boechera stricta
Bostr.0556s0457
I
0.763
Carubv10018693m.g
Capsella rubella
Carubv10018693m.g
I
0.763
Cagra.11216s0002
Capsella grandiflora
Cagra.11216s0002
I
0.763
Thhalv10005564m.g
Eutrema salsugineum
Thhalv10005564m.g
I
0.763
Gorai.001G263600
Gossypium raimondii
Gorai.001G263600
I
0.761
MYB118
Arabidopsis lyrata
fgenesh2_kg.5__560__AT3G27785.1
I
0.733
MYB118
Arabidopsis thaliana
AT3G27785
D
0.733
Bra025299
Brassica rapa
Bra025299
I
0.731
GSMUA_Achr6G06490_001
Musa acuminata
GSMUA_Achr6G06490_001
I
0.720
GLYMA16G07927
Glycine max
GLYMA16G07927
I
0.710
mg025334m
Mimulus guttatus
mg025334m
I
0.699
Ciclev10017526m.g
Citrus clementina
Ciclev10017526m.g
I
0.697
orange1.1g044021m.g
Citrus sinensis
orange1.1g044021m.g
I
0.697
PRUPE_ppa019507mg
Prunus persica
PRUPE_ppa019507mg
I
0.686
Bo2g144970
Brassica oleracea
Bo2g144970
I
0.685
Bra033027
Brassica rapa
Bra033027
I
0.685
cassava9008.m1
Manihot esculenta
cassava9008.m1
I
0.680
GSMUA_Achr3G19490_001
Musa acuminata
GSMUA_Achr3G19490_001
I
0.680
GLYMA19G13923
Glycine max
GLYMA19G13923
I
0.680
Pm015681
Prunus mume
Pm015681
I
0.677
MDP0000199939
Malus domestica
MDP0000199939
I
0.672
29917.m001977
Ricinus communis
29917.m001977
I
0.669
Cla010586
Citrullus lanatus
Cla010586
I
0.668
SapurV1A.0571s0110
Salix purpurea
SapurV1A.0571s0110
I
0.664
VIT_14s0066g01010
Vitis vinifera
VIT_14s0066g01010
I
0.663