MDP0000199939 (Malus domestica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 MDP0000199939 T288405_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.701 0.774
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.701 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000199939 Myb 237 283
MDP0000199939 Myb 289 334

Links

Other Myb/SANT family TFs
Other Malus domestica TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm015681 Prunus mume Pm015681 I 0.805
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.805
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.758
Cla010586 Citrullus lanatus Cla010586 I 0.754
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.733
29917.m001977 Ricinus communis 29917.m001977 I 0.725
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.725
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.722
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.721
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.718
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.718
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.713
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.713
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.713
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.712
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.709
GSMUA_Achr3G09050_001 Musa acuminata GSMUA_Achr3G09050_001 N 0.706
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.702
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.701
MYB118 Arabidopsis thaliana AT3G27785 D 0.701
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.698
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.693
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.690
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.690
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.689
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.686
TCM_016909 Theobroma cacao TCM_016909 I 0.686
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.686
30147.m013937 Ricinus communis 30147.m013937 I 0.686
mgf024290m Mimulus guttatus mgf024290m I 0.683
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.683
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.683
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.682
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.680
29681.m001315 Ricinus communis 29681.m001315 N 0.680
Bra025299 Brassica rapa Bra025299 I 0.680
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.676
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.676
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.675
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.675
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.673
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.672
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.671
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.670
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.669
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.669
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.668
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.668
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.668
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.668
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.666
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.666
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.666
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.666
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.666
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.666
Pm024743 Prunus mume Pm024743 I 0.666
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.665
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.664
Ca_19427 Cicer arietinum Ca_19427 I 0.662