MYB118 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s35140 T278204_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.722 0.828
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.722 0.828
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s35140.1 Myb 212 258
POPTR_0001s35140.1 Myb 264 309

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.833
29917.m001977 Ricinus communis 29917.m001977 I 0.824
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.780
Cla010586 Citrullus lanatus Cla010586 I 0.775
30147.m013937 Ricinus communis 30147.m013937 I 0.759
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.759
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.759
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.751
Pm015681 Prunus mume Pm015681 I 0.742
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.733
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.732
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.729
MYB118 Arabidopsis thaliana AT3G27785 D 0.722
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.722
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.718
Cla019490 Citrullus lanatus Cla019490 I 0.717
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.714
TCM_012087 Theobroma cacao TCM_012087 I 0.714
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.714
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.714
Pm024743 Prunus mume Pm024743 I 0.714
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.714
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.714
MDP0000215359 Malus domestica MDP0000215359 I 0.714
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.714
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.714
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.713
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.713
MDP0000199939 Malus domestica MDP0000199939 I 0.712
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.711
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.711
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.709
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.707
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.705
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.705
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.705
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.703
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.703
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.702
Bra025299 Brassica rapa Bra025299 I 0.702
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.697
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.696
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.690
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.690
Ca_17294 Cicer arietinum Ca_17294 I 0.688
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.687
TCM_016909 Theobroma cacao TCM_016909 I 0.687
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.685
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.685
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.685
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.684
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.684
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.681
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.681
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.681
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.680
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.679
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.679
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.678
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.677
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.677
Si039046m.g Setaria italica Si039046m.g I 0.677
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.675
MDP0000319656 Malus domestica MDP0000319656 I 0.674
Pm000541 Prunus mume Pm000541 I 0.674
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.674
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.674
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.674
F775_22212 Aegilops tauschii F775_22212 I 0.672
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.672
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.672
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.672
mgf024290m Mimulus guttatus mgf024290m I 0.671
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.666
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.664
Bo2g144970 Brassica oleracea Bo2g144970 I 0.663
Bra033027 Brassica rapa Bra033027 I 0.663
OB06G13860 Oryza brachyantha OB06G13860 I 0.663
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.663
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.663
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.661