CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava33974.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava33974.m1
T284202_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.775
0.860
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.775
0.860
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.683
0.753
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.683
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava33974.m1
Myb
177
223
KGQWTIEEDRLLAQLVEQYGLRKWSHIARMLPGRIGKQCRERWHNHL
cassava33974.m1
Myb
229
274
KDIWSEDEDKVLIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
145 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J02718
Panicum virgatum
Pavir.J02718
I
0.850
Pavir.J02497
Panicum virgatum
Pavir.J02497
I
0.850
Eucgr.B00301
Eucalyptus grandis
Eucgr.B00301
I
0.845
30147.m013937
Ricinus communis
30147.m013937
I
0.842
GLYMA06G19280
Glycine max
GLYMA06G19280
I
0.842
TCM_012087
Theobroma cacao
TCM_012087
I
0.842
Si039046m.g
Setaria italica
Si039046m.g
I
0.833
Sb01g005100
Sorghum bicolor
Sb01g005100
I
0.824
Cucsa.196850
Cucumis sativus
Cucsa.196850
I
0.820
GRMZM5G870592
Zea mays
GRMZM5G870592
I
0.818
cassava19706.m1
Manihot esculenta
cassava19706.m1
I
0.817
Pm024743
Prunus mume
Pm024743
I
0.817
PRUPE_ppa026791mg
Prunus persica
PRUPE_ppa026791mg
I
0.817
Cla019490
Citrullus lanatus
Cla019490
I
0.816
Ciclev10024427m.g
Citrus clementina
Ciclev10024427m.g
I
0.816
orange1.1g046859m.g
Citrus sinensis
orange1.1g046859m.g
I
0.816
Traes_7BS_D28CCE3B8
Triticum aestivum
Traes_7BS_D28CCE3B8
I
0.813
Pavir.J37434
Panicum virgatum
Pavir.J37434
I
0.813
TRIUR3_12421
Triticum urartu
TRIUR3_12421
I
0.813
Traes_7AS_A337F362A
Triticum aestivum
Traes_7AS_A337F362A
I
0.813
MYB98
Vitis vinifera
VIT_17s0000g08550
I
0.813
F775_22212
Aegilops tauschii
F775_22212
I
0.813
LPERR06G03780
Leersia perrieri
LPERR06G03780
I
0.813
MTR_3g077650
Medicago truncatula
MTR_3g077650
I
0.812
MTR_5g049190
Medicago truncatula
MTR_5g049190
I
0.811
gene32198-v1.0-hybrid
Fragaria vesca
gene32198-v1.0-hybrid
I
0.808
evm.TU.supercontig_76.38
Carica papaya
evm.TU.supercontig_76.38
I
0.807
OB06G13860
Oryza brachyantha
OB06G13860
I
0.804
Pavir.J25000
Panicum virgatum
Pavir.J25000
I
0.802
Traes_1BL_4D9406708
Triticum aestivum
Traes_1BL_4D9406708
I
0.801
Gorai.008G295800
Gossypium raimondii
Gorai.008G295800
I
0.800
Traes_1DL_918A8F357
Triticum aestivum
Traes_1DL_918A8F357
I
0.800
MDP0000215359
Malus domestica
MDP0000215359
I
0.800
Lus10042111.g
Linum usitatissimum
Lus10042111.g
I
0.796
OBART06G04170
Oryza barthii
OBART06G04170
I
0.795
OGLUM06G04280
Oryza glumaepatula
OGLUM06G04280
I
0.795
OLONG_010000
Oryza longistaminata
OLONG_010000
I
0.795
ONIVA06G05390
Oryza nivara
ONIVA06G05390
I
0.795
OPUNC06G03990
Oryza punctata
OPUNC06G03990
I
0.795
ORGLA06G0038500
Oryza glaberrima
ORGLA06G0038500
I
0.795
BGIOSGA022369
Oryza indica
BGIOSGA022369
I
0.795
OS06G0162700
Oryza sativa
OS06G0162700
I
0.795
OMERI06G04840
Oryza meridionalis
OMERI06G04840
I
0.795
ORUFI06G04170
Oryza rufipogon
ORUFI06G04170
I
0.795
SapurV1A.2163s0040
Salix purpurea
SapurV1A.2163s0040
I
0.793
Lus10002384.g
Linum usitatissimum
Lus10002384.g
I
0.792
Ca_17294
Cicer arietinum
Ca_17294
I
0.790
Ca_17087
Cicer arietinum
Ca_17087
I
0.788
GRMZM2G302549
Zea mays
GRMZM2G302549
I
0.788
Traes_7DS_E27ECBC6E
Triticum aestivum
Traes_7DS_E27ECBC6E
I
0.785
Thhalv10026824m.g
Eutrema salsugineum
Thhalv10026824m.g
I
0.784
Ca_07482
Cicer arietinum
Ca_07482
I
0.782
GLYMA05G02300
Glycine max
GLYMA05G02300
I
0.782
GSMUA_Achr3G19490_001
Musa acuminata
GSMUA_Achr3G19490_001
I
0.777
Bra013346
Brassica rapa
Bra013346
I
0.775
MYB98
Arabidopsis lyrata
scaffold_702543.1
I
0.775
Carubv10006734m.g
Capsella rubella
Carubv10006734m.g
I
0.775
Bostr.30275s0352
Boechera stricta
Bostr.30275s0352
I
0.775
MYB98
Arabidopsis thaliana
AT4G18770
D
0.775
Cagra.4306s0015
Capsella grandiflora
Cagra.4306s0015
I
0.775
Bo1g019910
Brassica oleracea
Bo1g019910
I
0.775
Bo3g157300
Brassica oleracea
Bo3g157300
I
0.775
SapurV1A.0396s0170
Salix purpurea
SapurV1A.0396s0170
I
0.774
Lus10027695.g
Linum usitatissimum
Lus10027695.g
I
0.770
POPTR_0005s12050
Populus trichocarpa
POPTR_0005s12050
I
0.769
OMERI12G02760
Oryza meridionalis
OMERI12G02760
I
0.766
ONIVA12G04220
Oryza nivara
ONIVA12G04220
I
0.766
OPUNC12G04510
Oryza punctata
OPUNC12G04510
I
0.766
Bra020992
Brassica rapa
Bra020992
I
0.766
OLONG_008158
Oryza longistaminata
OLONG_008158
I
0.766
OBART12G04480
Oryza barthii
OBART12G04480
I
0.766
ORGLA12G0042300
Oryza glaberrima
ORGLA12G0042300
I
0.766
OGLUM12G05330
Oryza glumaepatula
OGLUM12G05330
I
0.766
BGIOSGA036541
Oryza indica
BGIOSGA036541
I
0.766
OBART12G04500
Oryza barthii
OBART12G04500
I
0.766
POPTR_0015s08880
Populus trichocarpa
POPTR_0015s08880
I
0.760
PGSC0003DMG400036895
Solanum tuberosum
PGSC0003DMG400036895
I
0.759
Solyc06g071520.1
Solanum lycopersicum
Solyc06g071520.1
I
0.759
ORUFI12G05180
Oryza rufipogon
ORUFI12G05180
I
0.757
LPERR12G04190
Leersia perrieri
LPERR12G04190
I
0.757
Bo7g106240
Brassica oleracea
Bo7g106240
I
0.750
AMTR_s00096p00076220
Amborella trichopoda
AMTR_s00096p00076220
I
0.748
OB12G14410
Oryza brachyantha
OB12G14410
I
0.747
GSMUA_Achr6G06490_001
Musa acuminata
GSMUA_Achr6G06490_001
I
0.742
Bra012579
Brassica rapa
Bra012579
I
0.737
Eucgr.B00300
Eucalyptus grandis
Eucgr.B00300
I
0.735
MTR_4g105660
Medicago truncatula
MTR_4g105660
N
0.733
Ca_19427
Cicer arietinum
Ca_19427
I
0.728
29917.m001977
Ricinus communis
29917.m001977
I
0.721
Lus10039966.g
Linum usitatissimum
Lus10039966.g
I
0.720
POPTR_0012s08360
Populus trichocarpa
POPTR_0012s08360
I
0.717
Bra025299
Brassica rapa
Bra025299
I
0.715
MYB118
Populus trichocarpa
POPTR_0001s35140
I
0.714
SapurV1A.0571s0110
Salix purpurea
SapurV1A.0571s0110
I
0.705
gene08006-v1.0-hybrid
Fragaria vesca
gene08006-v1.0-hybrid
I
0.704
Bo3g018490
Brassica oleracea
Bo3g018490
I
0.703
Bra006744
Brassica rapa
Bra006744
I
0.703
Bra020346
Brassica rapa
Bra020346
I
0.703
Bo2g028290
Brassica oleracea
Bo2g028290
I
0.703
GSMUA_Achr10G00770_001
Musa acuminata
GSMUA_Achr10G00770_001
N
0.698
cassava9008.m1
Manihot esculenta
cassava9008.m1
I
0.697
Solyc03g112890.1
Solanum lycopersicum
Solyc03g112890.1
I
0.696
GLYMA05G08761
Glycine max
GLYMA05G08761
N
0.696
PGSC0003DMG400018092
Solanum tuberosum
PGSC0003DMG400018092
I
0.696
Pm000541
Prunus mume
Pm000541
I
0.695
MDP0000319656
Malus domestica
MDP0000319656
I
0.695
PRUPE_ppa018123mg
Prunus persica
PRUPE_ppa018123mg
I
0.695
mgf023372m
Mimulus guttatus
mgf023372m
I
0.692
PRUPE_ppa019507mg
Prunus persica
PRUPE_ppa019507mg
I
0.692
Thhalv10005564m.g
Eutrema salsugineum
Thhalv10005564m.g
I
0.692
fgenesh2_kg.3__2684__AT5G58850.1
Arabidopsis lyrata
fgenesh2_kg.3__2684__AT5G58850.1
I
0.691
PDK_20s1782461g001
Phoenix dactylifera
PDK_20s1782461g001
N
0.691
MTR_4g088015
Medicago truncatula
MTR_4g088015
I
0.691
fgenesh2_kg.277__1__AT5G58850.1
Arabidopsis lyrata
fgenesh2_kg.277__1__AT5G58850.1
I
0.691
mgf024290m
Mimulus guttatus
mgf024290m
I
0.688
MTR_7g037260
Medicago truncatula
MTR_7g037260
I
0.688
Gorai.001G263600
Gossypium raimondii
Gorai.001G263600
I
0.688
cassava26507.m1
Manihot esculenta
cassava26507.m1
N
0.685
evm.TU.supercontig_112.44
Carica papaya
evm.TU.supercontig_112.44
N
0.685
Cagra.11216s0002
Capsella grandiflora
Cagra.11216s0002
I
0.683
Carubv10018693m.g
Capsella rubella
Carubv10018693m.g
I
0.683
Pm015681
Prunus mume
Pm015681
I
0.683
Thhalv10016057m.g
Eutrema salsugineum
Thhalv10016057m.g
I
0.683
MYB118
Arabidopsis thaliana
AT3G27785
D
0.683
MYB118
Arabidopsis lyrata
fgenesh2_kg.5__560__AT3G27785.1
I
0.683
Bostr.0556s0457
Boechera stricta
Bostr.0556s0457
I
0.683
GLYMA19G13923
Glycine max
GLYMA19G13923
I
0.682
Carubv10028458m.g
Capsella rubella
Carubv10028458m.g
I
0.682
GSMUA_Achr6G33700_001
Musa acuminata
GSMUA_Achr6G33700_001
N
0.682
Cagra.0891s0081
Capsella grandiflora
Cagra.0891s0081
I
0.682
TCM_041651
Theobroma cacao
TCM_041651
N
0.680
TCM_016909
Theobroma cacao
TCM_016909
I
0.680
Cagra.1398s0045
Capsella grandiflora
Cagra.1398s0045
N
0.679
Carubv10003695m.g
Capsella rubella
Carubv10003695m.g
N
0.679
Thhalv10027294m.g
Eutrema salsugineum
Thhalv10027294m.g
N
0.678
Thhalv10015404m.g
Eutrema salsugineum
Thhalv10015404m.g
N
0.678
Cla010586
Citrullus lanatus
Cla010586
I
0.671
mg025334m
Mimulus guttatus
mg025334m
I
0.670
Lus10013084.g
Linum usitatissimum
Lus10013084.g
N
0.670
GLYMA16G07927
Glycine max
GLYMA16G07927
I
0.667
Ciclev10030254m.g
Citrus clementina
Ciclev10030254m.g
N
0.666
orange1.1g046581m.g
Citrus sinensis
orange1.1g046581m.g
N
0.666
Ciclev10017526m.g
Citrus clementina
Ciclev10017526m.g
I
0.662
orange1.1g044021m.g
Citrus sinensis
orange1.1g044021m.g
I
0.662
VIT_14s0066g01010
Vitis vinifera
VIT_14s0066g01010
I
0.661