MYB98 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT4G18770 T266495_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00		 Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148		 (Direct) (Direct)
MYB98
M07108_2.00		 Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02301_2.00 Myb 51 97
M02301_2.00 Myb 103 148

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G18770.1 Myb 217 263
AT4G18770.1 Myb 269 314

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.892
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.884
Bra013346 Brassica rapa Bra013346 I 0.884
Bo1g019910 Brassica oleracea Bo1g019910 I 0.884
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.884
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.884
Bo3g157300 Brassica oleracea Bo3g157300 I 0.881
Bra020992 Brassica rapa Bra020992 I 0.872
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.872
Bo7g106240 Brassica oleracea Bo7g106240 I 0.842
Bra012579 Brassica rapa Bra012579 I 0.829
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.794
F775_22212 Aegilops tauschii F775_22212 I 0.794
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.794
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.794
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.785
OB06G13860 Oryza brachyantha OB06G13860 I 0.785
OBART06G04170 Oryza barthii OBART06G04170 I 0.785
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.785
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.785
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.785
OS06G0162700 Oryza sativa OS06G0162700 I 0.785
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.785
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.785
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.785
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.785
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.785
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.782
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.781
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.778
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.778
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.775
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.774
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.765
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.761
Si039046m.g Setaria italica Si039046m.g I 0.761
Cla019490 Citrullus lanatus Cla019490 I 0.759
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.759
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.758
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.756
Ca_17087 Cicer arietinum Ca_17087 I 0.755
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.753
TCM_012087 Theobroma cacao TCM_012087 I 0.753
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.751
Ca_07482 Cicer arietinum Ca_07482 I 0.749
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.746
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.746
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.745
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.743
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.743
OBART12G04480 Oryza barthii OBART12G04480 I 0.743
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.743
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.743
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.743
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.743
OBART12G04500 Oryza barthii OBART12G04500 I 0.743
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.743
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.743
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.741
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.741
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.741
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.738
30147.m013937 Ricinus communis 30147.m013937 I 0.735
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.734
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.733
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.733
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.732
Pm024743 Prunus mume Pm024743 I 0.729
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.729
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.729
MDP0000215359 Malus domestica MDP0000215359 I 0.729
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.727
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.725
OB12G14410 Oryza brachyantha OB12G14410 I 0.723
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.722
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.721
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.720
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.718
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.714
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.714
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.713
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.710
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.707
Ca_17294 Cicer arietinum Ca_17294 I 0.696
mg025334m Mimulus guttatus mg025334m I 0.695
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.694
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.692
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.692
mgf023372m Mimulus guttatus mgf023372m I 0.690
MTR_4g088015 Medicago truncatula MTR_4g088015 I 0.685
Bo2g028290 Brassica oleracea Bo2g028290 I 0.685
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.683
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.677
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.674
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.674
Ca_19427 Cicer arietinum Ca_19427 I 0.673
Bra020346 Brassica rapa Bra020346 I 0.672
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.672
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.672
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.672
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.672
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.672
Bra025299 Brassica rapa Bra025299 I 0.669
mgf024290m Mimulus guttatus mgf024290m I 0.667
29917.m001977 Ricinus communis 29917.m001977 I 0.666
Bo3g018490 Brassica oleracea Bo3g018490 I 0.664
Bra006744 Brassica rapa Bra006744 I 0.664
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.661
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.661