CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g157300
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo3g157300
T267286_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.881
0.968
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.881
0.968
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g157300.1
Myb
215
261
KGQWTAEEDRILVQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHL
Bo3g157300.1
Myb
267
312
KETWSEDEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g019910
Brassica oleracea
Bo1g019910
I
0.906
Bra013346
Brassica rapa
Bra013346
I
0.906
Cagra.4306s0015
Capsella grandiflora
Cagra.4306s0015
I
0.906
Carubv10006734m.g
Capsella rubella
Carubv10006734m.g
I
0.906
Bostr.30275s0352
Boechera stricta
Bostr.30275s0352
I
0.906
Bra020992
Brassica rapa
Bra020992
I
0.900
Thhalv10026824m.g
Eutrema salsugineum
Thhalv10026824m.g
I
0.900
MYB98
Arabidopsis thaliana
AT4G18770
D
0.881
MYB98
Arabidopsis lyrata
scaffold_702543.1
I
0.864
Bo7g106240
Brassica oleracea
Bo7g106240
I
0.864
Bra012579
Brassica rapa
Bra012579
I
0.851
Traes_7BS_D28CCE3B8
Triticum aestivum
Traes_7BS_D28CCE3B8
I
0.797
TRIUR3_12421
Triticum urartu
TRIUR3_12421
I
0.797
F775_22212
Aegilops tauschii
F775_22212
I
0.797
Traes_7AS_A337F362A
Triticum aestivum
Traes_7AS_A337F362A
I
0.797
OMERI06G04840
Oryza meridionalis
OMERI06G04840
I
0.788
ONIVA06G05390
Oryza nivara
ONIVA06G05390
I
0.788
LPERR06G03780
Leersia perrieri
LPERR06G03780
I
0.788
OGLUM06G04280
Oryza glumaepatula
OGLUM06G04280
I
0.788
OLONG_010000
Oryza longistaminata
OLONG_010000
I
0.788
BGIOSGA022369
Oryza indica
BGIOSGA022369
I
0.788
OPUNC06G03990
Oryza punctata
OPUNC06G03990
I
0.788
OBART06G04170
Oryza barthii
OBART06G04170
I
0.788
OB06G13860
Oryza brachyantha
OB06G13860
I
0.788
ORGLA06G0038500
Oryza glaberrima
ORGLA06G0038500
I
0.788
OS06G0162700
Oryza sativa
OS06G0162700
I
0.788
ORUFI06G04170
Oryza rufipogon
ORUFI06G04170
I
0.788
Traes_1BL_4D9406708
Triticum aestivum
Traes_1BL_4D9406708
I
0.785
Traes_1DL_918A8F357
Triticum aestivum
Traes_1DL_918A8F357
I
0.784
Pavir.J02497
Panicum virgatum
Pavir.J02497
I
0.781
Pavir.J02718
Panicum virgatum
Pavir.J02718
I
0.781
cassava33974.m1
Manihot esculenta
cassava33974.m1
I
0.775
Eucgr.B00301
Eucalyptus grandis
Eucgr.B00301
I
0.771
Lus10027695.g
Linum usitatissimum
Lus10027695.g
I
0.769
Traes_7DS_E27ECBC6E
Triticum aestivum
Traes_7DS_E27ECBC6E
I
0.768
Si039046m.g
Setaria italica
Si039046m.g
I
0.764
Sb01g005100
Sorghum bicolor
Sb01g005100
I
0.764
Cla019490
Citrullus lanatus
Cla019490
I
0.762
GRMZM5G870592
Zea mays
GRMZM5G870592
I
0.759
GLYMA06G19280
Glycine max
GLYMA06G19280
I
0.756
Cucsa.196850
Cucumis sativus
Cucsa.196850
I
0.755
MTR_3g077650
Medicago truncatula
MTR_3g077650
I
0.754
Ca_17087
Cicer arietinum
Ca_17087
I
0.752
Gorai.008G295800
Gossypium raimondii
Gorai.008G295800
I
0.750
TCM_012087
Theobroma cacao
TCM_012087
I
0.750
Pavir.J25000
Panicum virgatum
Pavir.J25000
I
0.749
Lus10039966.g
Linum usitatissimum
Lus10039966.g
I
0.749
evm.TU.supercontig_76.38
Carica papaya
evm.TU.supercontig_76.38
I
0.748
ONIVA12G04220
Oryza nivara
ONIVA12G04220
I
0.746
OBART12G04480
Oryza barthii
OBART12G04480
I
0.746
OPUNC12G04510
Oryza punctata
OPUNC12G04510
I
0.746
BGIOSGA036541
Oryza indica
BGIOSGA036541
I
0.746
Lus10042111.g
Linum usitatissimum
Lus10042111.g
I
0.746
OBART12G04500
Oryza barthii
OBART12G04500
I
0.746
OLONG_008158
Oryza longistaminata
OLONG_008158
I
0.746
ORGLA12G0042300
Oryza glaberrima
ORGLA12G0042300
I
0.746
OGLUM12G05330
Oryza glumaepatula
OGLUM12G05330
I
0.746
Ca_07482
Cicer arietinum
Ca_07482
I
0.746
OMERI12G02760
Oryza meridionalis
OMERI12G02760
I
0.746
Pavir.J37434
Panicum virgatum
Pavir.J37434
I
0.744
SapurV1A.0396s0170
Salix purpurea
SapurV1A.0396s0170
I
0.743
POPTR_0005s12050
Populus trichocarpa
POPTR_0005s12050
I
0.738
ORUFI12G05180
Oryza rufipogon
ORUFI12G05180
I
0.737
30147.m013937
Ricinus communis
30147.m013937
I
0.735
POPTR_0015s08880
Populus trichocarpa
POPTR_0015s08880
I
0.734
GSMUA_Achr3G19490_001
Musa acuminata
GSMUA_Achr3G19490_001
I
0.732
LPERR12G04190
Leersia perrieri
LPERR12G04190
I
0.730
PGSC0003DMG400036895
Solanum tuberosum
PGSC0003DMG400036895
I
0.730
Solyc06g071520.1
Solanum lycopersicum
Solyc06g071520.1
I
0.730
GRMZM2G302549
Zea mays
GRMZM2G302549
I
0.728
SapurV1A.2163s0040
Salix purpurea
SapurV1A.2163s0040
I
0.726
Pm024743
Prunus mume
Pm024743
I
0.726
OB12G14410
Oryza brachyantha
OB12G14410
I
0.726
MDP0000215359
Malus domestica
MDP0000215359
I
0.726
PRUPE_ppa026791mg
Prunus persica
PRUPE_ppa026791mg
I
0.726
Lus10002384.g
Linum usitatissimum
Lus10002384.g
I
0.725
GLYMA05G02300
Glycine max
GLYMA05G02300
I
0.717
MTR_5g049190
Medicago truncatula
MTR_5g049190
I
0.715
Ciclev10024427m.g
Citrus clementina
Ciclev10024427m.g
I
0.710
gene32198-v1.0-hybrid
Fragaria vesca
gene32198-v1.0-hybrid
I
0.710
cassava19706.m1
Manihot esculenta
cassava19706.m1
I
0.710
orange1.1g046859m.g
Citrus sinensis
orange1.1g046859m.g
I
0.710
PGSC0003DMG400018092
Solanum tuberosum
PGSC0003DMG400018092
I
0.696
Solyc03g112890.1
Solanum lycopersicum
Solyc03g112890.1
I
0.696
Ca_17294
Cicer arietinum
Ca_17294
I
0.693
GSMUA_Achr6G06490_001
Musa acuminata
GSMUA_Achr6G06490_001
I
0.692
mg025334m
Mimulus guttatus
mg025334m
I
0.692
MYB98
Vitis vinifera
VIT_17s0000g08550
I
0.691
mgf023372m
Mimulus guttatus
mgf023372m
I
0.687
GLYMA19G13923
Glycine max
GLYMA19G13923
I
0.685
Bo2g028290
Brassica oleracea
Bo2g028290
I
0.682
MTR_7g037260
Medicago truncatula
MTR_7g037260
I
0.682
Eucgr.B00300
Eucalyptus grandis
Eucgr.B00300
I
0.677
Ca_19427
Cicer arietinum
Ca_19427
I
0.676
Bra025299
Brassica rapa
Bra025299
I
0.672
GLYMA16G07927
Glycine max
GLYMA16G07927
I
0.671
mgf024290m
Mimulus guttatus
mgf024290m
I
0.671
Bra020346
Brassica rapa
Bra020346
I
0.669
fgenesh2_kg.277__1__AT5G58850.1
Arabidopsis lyrata
fgenesh2_kg.277__1__AT5G58850.1
I
0.669
Cagra.0891s0081
Capsella grandiflora
Cagra.0891s0081
I
0.669
fgenesh2_kg.3__2684__AT5G58850.1
Arabidopsis lyrata
fgenesh2_kg.3__2684__AT5G58850.1
I
0.669
29917.m001977
Ricinus communis
29917.m001977
I
0.669
Carubv10028458m.g
Capsella rubella
Carubv10028458m.g
I
0.669
AMTR_s00096p00076220
Amborella trichopoda
AMTR_s00096p00076220
I
0.669
MTR_4g088015
Medicago truncatula
MTR_4g088015
I
0.664
Bra006744
Brassica rapa
Bra006744
I
0.661
Bo3g018490
Brassica oleracea
Bo3g018490
I
0.661