fgenesh2_kg.3__2684__AT5G58850.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.3__2684__AT5G58850.1 T270773_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.672 0.753
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__2684__AT5G58850.1 Myb 105 151
fgenesh2_kg.3__2684__AT5G58850.1 Myb 157 202

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.909
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.900
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.900
Bra020346 Brassica rapa Bra020346 I 0.879
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.875
Bo2g028290 Brassica oleracea Bo2g028290 I 0.875
Bra006744 Brassica rapa Bra006744 I 0.862
Bo3g018490 Brassica oleracea Bo3g018490 I 0.862
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.854
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.854
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.828
MYB64 Arabidopsis thaliana AT5G11050 N 0.819
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.819
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.795
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.795
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.758
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.740
Cla008304 Citrullus lanatus Cla008304 N 0.735
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.732
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.730
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.730
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.727
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.727
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.724
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.724
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.721
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.721
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.720
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.718
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.715
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.712
OS06G0162700 Oryza sativa OS06G0162700 I 0.706
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.706
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.706
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.706
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.706
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.706
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.706
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.706
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.706
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.706
OB06G13860 Oryza brachyantha OB06G13860 I 0.706
F775_22212 Aegilops tauschii F775_22212 I 0.706
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.706
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.706
OBART06G04170 Oryza barthii OBART06G04170 I 0.706
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.706
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.706
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.704
TCM_041651 Theobroma cacao TCM_041651 N 0.701
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.697
29681.m001315 Ricinus communis 29681.m001315 N 0.695
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.695
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.695
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.694
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.694
TCM_012087 Theobroma cacao TCM_012087 I 0.694
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.693
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.693
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.693
30147.m013937 Ricinus communis 30147.m013937 I 0.691
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.691
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.691
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.689
Pm000541 Prunus mume Pm000541 I 0.686
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.686
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.685
MDP0000319656 Malus domestica MDP0000319656 I 0.683
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.683
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.683
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.682
Cla019490 Citrullus lanatus Cla019490 I 0.682
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.682
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.681
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.678
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.677
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.676
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.674
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.674
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.673
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.672
Bo1g019910 Brassica oleracea Bo1g019910 I 0.672
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.672
Bra013346 Brassica rapa Bra013346 I 0.672
MYB98 Arabidopsis thaliana AT4G18770 D 0.672
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.672
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.670
MDP0000215359 Malus domestica MDP0000215359 I 0.669
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.669
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.669
Pm024743 Prunus mume Pm024743 I 0.669
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.669
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.669
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.669
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.669
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.669
Bo3g157300 Brassica oleracea Bo3g157300 I 0.669
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.669
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.669
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.669
MDP0000555913 Malus domestica MDP0000555913 N 0.668
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.667
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.666
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.664
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.664
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.664
OBART12G04500 Oryza barthii OBART12G04500 I 0.664
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.664
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.664
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.664
OBART12G04480 Oryza barthii OBART12G04480 I 0.664
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.664
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.664
Si039046m.g Setaria italica Si039046m.g I 0.664
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.664
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.663
Ca_17294 Cicer arietinum Ca_17294 I 0.661
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.661