CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MYB118
(
Arabidopsis lyrata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
fgenesh2_kg.5__560__AT3G27785.1
T270805_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.875
0.957
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.875
0.957
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.5__560__AT3G27785.1
Myb
184
230
KGQWTPEEDKLLVQLVELHGTKKWSQIAKMLQGRVGKQCRERWHNHL
fgenesh2_kg.5__560__AT3G27785.1
Myb
236
281
KDVWTEEEDMILIKAHKEIGNRWAEIARNLPGRTENTIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis lyrata
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYB118
Arabidopsis thaliana
AT3G27785
D
0.875
Bostr.0556s0457
Boechera stricta
Bostr.0556s0457
I
0.828
Cagra.11216s0002
Capsella grandiflora
Cagra.11216s0002
I
0.828
Carubv10018693m.g
Capsella rubella
Carubv10018693m.g
I
0.828
Bra033027
Brassica rapa
Bra033027
I
0.807
Thhalv10005564m.g
Eutrema salsugineum
Thhalv10005564m.g
I
0.800
Bo2g144970
Brassica oleracea
Bo2g144970
I
0.798
Bra025299
Brassica rapa
Bra025299
I
0.787
Gorai.001G263600
Gossypium raimondii
Gorai.001G263600
I
0.787
TCM_016909
Theobroma cacao
TCM_016909
I
0.763
Ciclev10017526m.g
Citrus clementina
Ciclev10017526m.g
I
0.753
orange1.1g044021m.g
Citrus sinensis
orange1.1g044021m.g
I
0.753
29917.m001977
Ricinus communis
29917.m001977
I
0.744
Cla010586
Citrullus lanatus
Cla010586
I
0.742
cassava9008.m1
Manihot esculenta
cassava9008.m1
I
0.739
SapurV1A.0571s0110
Salix purpurea
SapurV1A.0571s0110
I
0.738
evm.TU.supercontig_108.29
Carica papaya
evm.TU.supercontig_108.29
I
0.733
PRUPE_ppa019507mg
Prunus persica
PRUPE_ppa019507mg
I
0.730
VIT_14s0066g01010
Vitis vinifera
VIT_14s0066g01010
I
0.730
Pm015681
Prunus mume
Pm015681
I
0.730
MYB118
Populus trichocarpa
POPTR_0001s35140
I
0.722
mgf024290m
Mimulus guttatus
mgf024290m
I
0.721
Lus10042111.g
Linum usitatissimum
Lus10042111.g
I
0.717
GLYMA16G07927
Glycine max
GLYMA16G07927
I
0.713
Eucgr.B00301
Eucalyptus grandis
Eucgr.B00301
I
0.708
cassava19706.m1
Manihot esculenta
cassava19706.m1
I
0.708
Pm024743
Prunus mume
Pm024743
I
0.708
MYB98
Vitis vinifera
VIT_17s0000g08550
I
0.708
PRUPE_ppa026791mg
Prunus persica
PRUPE_ppa026791mg
I
0.708
Solyc06g071520.1
Solanum lycopersicum
Solyc06g071520.1
I
0.708
PGSC0003DMG400036895
Solanum tuberosum
PGSC0003DMG400036895
I
0.708
GSMUA_Achr3G19490_001
Musa acuminata
GSMUA_Achr3G19490_001
I
0.704
MTR_3g077650
Medicago truncatula
MTR_3g077650
I
0.702
MDP0000199939
Malus domestica
MDP0000199939
I
0.701
30147.m013937
Ricinus communis
30147.m013937
I
0.699
GLYMA05G02300
Glycine max
GLYMA05G02300
I
0.699
Lus10002384.g
Linum usitatissimum
Lus10002384.g
I
0.696
Pavir.J02718
Panicum virgatum
Pavir.J02718
I
0.689
Pavir.J02497
Panicum virgatum
Pavir.J02497
I
0.689
Cla019490
Citrullus lanatus
Cla019490
I
0.686
evm.TU.supercontig_76.38
Carica papaya
evm.TU.supercontig_76.38
I
0.686
AMTR_s00096p00076220
Amborella trichopoda
AMTR_s00096p00076220
I
0.685
Ciclev10024427m.g
Citrus clementina
Ciclev10024427m.g
I
0.683
gene32198-v1.0-hybrid
Fragaria vesca
gene32198-v1.0-hybrid
I
0.683
GLYMA19G13923
Glycine max
GLYMA19G13923
I
0.683
Cucsa.196850
Cucumis sativus
Cucsa.196850
I
0.683
TCM_012087
Theobroma cacao
TCM_012087
I
0.683
orange1.1g046859m.g
Citrus sinensis
orange1.1g046859m.g
I
0.683
cassava33974.m1
Manihot esculenta
cassava33974.m1
I
0.683
MDP0000215359
Malus domestica
MDP0000215359
I
0.683
Ca_17294
Cicer arietinum
Ca_17294
I
0.682
MTR_4g105660
Medicago truncatula
MTR_4g105660
N
0.676
Ca_17087
Cicer arietinum
Ca_17087
I
0.674
SapurV1A.0396s0170
Salix purpurea
SapurV1A.0396s0170
I
0.674
POPTR_0012s08360
Populus trichocarpa
POPTR_0012s08360
I
0.672
POPTR_0005s12050
Populus trichocarpa
POPTR_0005s12050
I
0.669
Ca_07482
Cicer arietinum
Ca_07482
I
0.668
MDP0000319656
Malus domestica
MDP0000319656
I
0.667
Pm000541
Prunus mume
Pm000541
I
0.667
PRUPE_ppa018123mg
Prunus persica
PRUPE_ppa018123mg
I
0.667
gene08006-v1.0-hybrid
Fragaria vesca
gene08006-v1.0-hybrid
I
0.667
Pavir.J25000
Panicum virgatum
Pavir.J25000
I
0.664
Lus10005864.g
Linum usitatissimum
Lus10005864.g
I
0.664
PGSC0003DMG400018092
Solanum tuberosum
PGSC0003DMG400018092
I
0.664
Solyc03g112890.1
Solanum lycopersicum
Solyc03g112890.1
I
0.664
Sb01g005100
Sorghum bicolor
Sb01g005100
I
0.663
Traes_1DL_918A8F357
Triticum aestivum
Traes_1DL_918A8F357
I
0.662
GLYMA06G19280
Glycine max
GLYMA06G19280
I
0.661