gene01013-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene01013-v1.0-hybrid T287219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.764 0.839
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.764 0.839
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.729 0.839
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.729 0.839
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.720 0.774
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.720 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01013.1-v1.0-hybrid Myb 22 68
mrna01013.1-v1.0-hybrid Myb 74 119

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

376 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB008095 Anopheles albimanus AALB008095 N 0.000
AARA006903 Anopheles arabiensis AARA006903 N 0.000
AATE015739 Anopheles atroparvus AATE015739 N 0.000
ACOM042347 Anopheles coluzzii ACOM042347 N 0.000
ACUA010867 Anopheles culicifacies ACUA010867 N 0.000
ADIR002423 Anopheles dirus ADIR002423 N 0.000
AEPI009840 Anopheles epiroticus AEPI009840 N 0.000
AFAF000552 Anopheles farauti AFAF000552 N 0.000
AFUN001693 Anopheles funestus AFUN001693 N 0.000
AMAM021937 Anopheles maculatus AMAM021937 N 0.000
AMEM011276 Anopheles merus AMEM011276 N 0.000
AMIN003349 Anopheles minimus AMIN003349 N 0.000
ASTEI05558 Anopheles stephensi ASTEI05558 N 0.000
CapteG108462 Capitella teleta CapteG108462 N 0.000
Cflo_01889--XP_001120905.1_APIME Camponotus floridanus Cflo_01889--XP_001120905.1_APIME N 0.000
CPIJ006335 Culex quinquefasciatus CPIJ006335 N 0.000
CpipJ_CPIJ006335 Culex pipiens CpipJ_CPIJ006335 N 0.000
GD20794 Drosophila simulans FBgn0192257 N 0.000
HHAL010121-PA Halyomorpha halys HHAL010121-PA N 0.000
L798_07377 Zootermopsis nevadensis L798_07377 N 0.000
MDOA007188 Musca domestica MDOA007188 N 0.000
PPAI001013 Phlebotomus papatasi PPAI001013 N 0.000
tetur09g05530 Tetranychus urticae tetur09g05530 N 0.000