CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.009G413600
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.009G413600
T287732_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.701
0.674
MYB27
M07097_2.00
Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD
Dap-seq
OMalley et al.(2016)
MYB27_col_a
0.690
0.728
MYB27
M07098_2.00
Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN
Dap-seq
OMalley et al.(2016)
MYB27_colamp_a
0.690
0.728
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.009G413600.1
Myb
17
64
KGPWHEEEDERLISFVKLLGSRRWDYIAQASGLKRSGKSCRLRWVNYL
Gorai.009G413600.1
Myb
71
115
SSISAEEEMIILKLHQKWGNKWSMIARMLPGRTDNEIKNYWRTHL
Gorai.009G413600.2
Myb
17
64
KGPWHEEEDERLISFVKLLGSRRWDYIAQASGLKRSGKSCRLRWVNYL
Gorai.009G413600.2
Myb
71
115
SSISAEEEMIILKLHQKWGNKWSMIARMLPGRTDNEIKNYWRTHL
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
99 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29788.m000340
Ricinus communis
29788.m000340
I
0.704
AMTR_s01267p00006490
Amborella trichopoda
AMTR_s01267p00006490
I
0.673
Aquca_030_00038
Aquilegia coerulea
Aquca_030_00038
I
0.700
AtMYB27
Arabidopsis lyrata
fgenesh2_kg.5__1687__AT3G53200.1
I
0.709
AtMYB27
Vitis vinifera
VIT_08s0007g04830
I
0.756
ATMYB48
Arabidopsis thaliana
AT3G46130
I
0.701
ATMYB48-1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001097
I
0.701
BGIOSGA005283
Oryza indica
BGIOSGA005283
I
0.700
Bo1g098860
Brassica oleracea
Bo1g098860
I
0.680
Bo2g025410
Brassica oleracea
Bo2g025410
I
0.671
Bo3g083130
Brassica oleracea
Bo3g083130
I
0.680
Bo3g130340
Brassica oleracea
Bo3g130340
I
0.698
Bo6g067190
Brassica oleracea
Bo6g067190
I
0.708
Bo7g033260
Brassica oleracea
Bo7g033260
I
0.680
Bo8g082570
Brassica oleracea
Bo8g082570
I
0.694
Bostr.19424s0195
Boechera stricta
Bostr.19424s0195
I
0.680
Bostr.9544s0002
Boechera stricta
Bostr.9544s0002
I
0.725
Bra001941
Brassica rapa
Bra001941
I
0.680
Bra002533
Brassica rapa
Bra002533
I
0.666
Bra006694
Brassica rapa
Bra006694
I
0.671
Bra006977
Brassica rapa
Bra006977
I
0.694
Bra015029
Brassica rapa
Bra015029
I
0.680
Bra018223
Brassica rapa
Bra018223
I
0.698
Bra020289
Brassica rapa
Bra020289
I
0.671
Bra028369
Brassica rapa
Bra028369
I
0.680
Bra028550
Brassica rapa
Bra028550
I
0.712
BRADI2G62510
Brachypodium distachyon
BRADI2G62510
I
0.694
BRADI4G04050
Brachypodium distachyon
BRADI4G04050
I
0.670
Cagra.0454s0003
Capsella grandiflora
Cagra.0454s0003
I
0.680
Cagra.0612s0043
Capsella grandiflora
Cagra.0612s0043
I
0.725
Carubv10014367m.g
Capsella rubella
Carubv10014367m.g
I
0.680
Carubv10017875m.g
Capsella rubella
Carubv10017875m.g
I
0.701
Carubv10019409m.g
Capsella rubella
Carubv10019409m.g
I
0.725
cassava13589.valid.m1
Manihot esculenta
cassava13589.valid.m1
I
0.704
cassava15759.m1
Manihot esculenta
cassava15759.m1
N
0.673
Ca_02593
Cicer arietinum
Ca_02593
I
0.690
Cla008413
Citrullus lanatus
Cla008413
I
0.704
Cla013488
Citrullus lanatus
Cla013488
I
0.704
Cucsa.213500
Cucumis sativus
Cucsa.213500
I
0.704
Cucsa.379880
Cucumis sativus
Cucsa.379880
I
0.704
evm.TU.supercontig_190.35
Carica papaya
evm.TU.supercontig_190.35
I
0.701
evm.TU.supercontig_92.99
Carica papaya
evm.TU.supercontig_92.99
I
0.734
fgenesh2_kg.3__2645__AT3G24310.1
Arabidopsis lyrata
fgenesh2_kg.3__2645__AT3G24310.1
I
0.680
gene09683-v1.0-hybrid
Fragaria vesca
gene09683-v1.0-hybrid
I
0.707
GLYMA13G40830
Glycine max
GLYMA13G40830
I
0.697
GLYMA15G04620
Glycine max
GLYMA15G04620
I
0.697
Gorai.001G107900
Gossypium raimondii
Gorai.001G107900
I
0.701
Gorai.003G136400
Gossypium raimondii
Gorai.003G136400
I
0.701
Gorai.013G265300
Gossypium raimondii
Gorai.013G265300
I
0.699
GRMZM2G048136
Zea mays
GRMZM2G048136
I
0.671
GSMUA_Achr10G03710_001
Musa acuminata
GSMUA_Achr10G03710_001
I
0.662
GSMUA_Achr10G13520_001
Musa acuminata
GSMUA_Achr10G13520_001
I
0.701
GSMUA_Achr10G26730_001
Musa acuminata
GSMUA_Achr10G26730_001
I
0.674
GSMUA_Achr11G24690_001
Musa acuminata
GSMUA_Achr11G24690_001
I
0.701
GSMUA_Achr2G16200_001
Musa acuminata
GSMUA_Achr2G16200_001
I
0.666
GSMUA_Achr5G28350_001
Musa acuminata
GSMUA_Achr5G28350_001
I
0.694
GSMUA_Achr6G15370_001
Musa acuminata
GSMUA_Achr6G15370_001
I
0.699
GSMUA_Achr7G18200_001
Musa acuminata
GSMUA_Achr7G18200_001
I
0.701
LPERR01G40120
Leersia perrieri
LPERR01G40120
I
0.700
Lus10005886.g
Linum usitatissimum
Lus10005886.g
I
0.698
MDP0000143156
Malus domestica
MDP0000143156
I
0.706
MDP0000177010
Malus domestica
MDP0000177010
I
0.701
mgf004640m
Mimulus guttatus
mgf004640m
I
0.689
mgf020363m
Mimulus guttatus
mgf020363m
I
0.685
mgf025691m
Mimulus guttatus
mgf025691m
I
0.685
MTR_2g096380
Medicago truncatula
MTR_2g096380
I
0.690
MTR_4g063100
Medicago truncatula
MTR_4g063100
I
0.699
MYB27
Arabidopsis thaliana
AT3G53200
D
0.690
MYB305
Arabidopsis thaliana
AT3G24310
I
0.680
MYB59
Arabidopsis lyrata
fgenesh2_kg.8__1928__AT5G59780.3
I
0.701
MYB59
Arabidopsis thaliana
AT5G59780
D
0.701
OB01G54920
Oryza brachyantha
OB01G54920
I
0.700
OBART01G45730
Oryza barthii
OBART01G45730
I
0.700
OPUNC01G44650
Oryza punctata
OPUNC01G44650
I
0.700
orange1.1g023677m.g
Citrus sinensis
orange1.1g023677m.g
I
0.701
orange1.1g044161m.g
Citrus sinensis
orange1.1g044161m.g
I
0.722
ORGLA01G0394700
Oryza glaberrima
ORGLA01G0394700
I
0.700
ORUFI01G49220
Oryza rufipogon
ORUFI01G49220
I
0.700
PGSC0003DMG400015536
Solanum tuberosum
PGSC0003DMG400015536
I
0.669
PK10274.1
Cannabis sativa
PK10274.1
I
0.750
Pm000809
Prunus mume
Pm000809
I
0.701
Pm026334
Prunus mume
Pm026334
N
0.703
POPTR_0001s24220
Populus trichocarpa
POPTR_0001s24220
I
0.704
POPTR_0009s03240
Populus trichocarpa
POPTR_0009s03240
I
0.674
PRUPE_ppa015954mg
Prunus persica
PRUPE_ppa015954mg
I
0.701
PRUPE_ppa024805mg
Prunus persica
PRUPE_ppa024805mg
N
0.685
SapurV1A.0008s0940
Salix purpurea
SapurV1A.0008s0940
I
0.701
SapurV1A.0008s0950
Salix purpurea
SapurV1A.0008s0950
I
0.701
SapurV1A.0040s0010
Salix purpurea
SapurV1A.0040s0010
I
0.674
SapurV1A.0489s0220
Salix purpurea
SapurV1A.0489s0220
I
0.674
Solyc11g073120.1
Solanum lycopersicum
Solyc11g073120.1
I
0.669
TCM_022293
Theobroma cacao
TCM_022293
I
0.810
TCM_041904
Theobroma cacao
TCM_041904
I
0.701
Thhalv10002634m.g
Eutrema salsugineum
Thhalv10002634m.g
I
0.680
Thhalv10002648m.g
Eutrema salsugineum
Thhalv10002648m.g
I
0.701
Thhalv10010915m.g
Eutrema salsugineum
Thhalv10010915m.g
I
0.731
Thhalv10014524m.g
Eutrema salsugineum
Thhalv10014524m.g
I
0.701
VIT_06s0004g04140
Vitis vinifera
VIT_06s0004g04140
I
0.671