Pavir.Ca00957 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ca00957 T289060_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.678 0.761
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.678 0.761
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.678 0.761
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.663 0.761
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.661 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00957.1.p Myb 28 75
Pavir.Ca00957.1.p Myb 81 125

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si024431m.g Setaria italica Si024431m.g N 0.854
Traes_1AL_91299CB97 Triticum aestivum Traes_1AL_91299CB97 I 0.842
MLOC_68593 Hordeum vulgare MLOC_68593 I 0.839
BGIOSGA020382 Oryza indica BGIOSGA020382 I 0.822
Pavir.J02092 Panicum virgatum Pavir.J02092 N 0.817
TRIUR3_25116 Triticum urartu TRIUR3_25116 I 0.816
OB05G33720 Oryza brachyantha OB05G33720 I 0.778
Pavir.Bb03718 Panicum virgatum Pavir.Bb03718 I 0.749
OMERI07G23590 Oryza meridionalis OMERI07G23590 I 0.725
OGLUM07G26960 Oryza glumaepatula OGLUM07G26960 I 0.725
OBART07G26990 Oryza barthii OBART07G26990 I 0.725
ONIVA07G26740 Oryza nivara ONIVA07G26740 I 0.725
Si022474m.g Setaria italica Si022474m.g I 0.725
Pavir.J03771 Panicum virgatum Pavir.J03771 I 0.725
Sb09g002675 Sorghum bicolor Sb09g002675 I 0.725
ORUFI07G27930 Oryza rufipogon ORUFI07G27930 I 0.725
ORGLA07G0213800 Oryza glaberrima ORGLA07G0213800 I 0.725
OPUNC07G25360 Oryza punctata OPUNC07G25360 I 0.725
OS07G0688200 Oryza sativa OS07G0688200 I 0.725
BGIOSGA026430 Oryza indica BGIOSGA026430 I 0.725
GSMUA_Achr6G27290_001 Musa acuminata GSMUA_Achr6G27290_001 I 0.724
Pavir.Ca00769 Panicum virgatum Pavir.Ca00769 I 0.721
GRMZM2G425427 Zea mays GRMZM2G425427 I 0.721
GRMZM2G001824 Zea mays GRMZM2G001824 I 0.716
GSMUA_Achr9G07000_001 Musa acuminata GSMUA_Achr9G07000_001 I 0.716
Bra001005 Brassica rapa Bra001005 I 0.714
Sb02g043420 Sorghum bicolor Sb02g043420 I 0.714
Aquca_002_00135 Aquilegia coerulea Aquca_002_00135 I 0.712
Pavir.Ba00256 Panicum virgatum Pavir.Ba00256 I 0.709
OB03G25040 Oryza brachyantha OB03G25040 I 0.708
ORGLA03G0145100 Oryza glaberrima ORGLA03G0145100 I 0.708
MYB2 Oryza sativa OS03G0315400 I 0.708
LPERR03G13320 Leersia perrieri LPERR03G13320 I 0.708
GRMZM2G330475 Zea mays GRMZM2G330475 I 0.708
BGIOSGA010857 Oryza indica BGIOSGA010857 I 0.708
ORGLA01G0104900 Oryza glaberrima ORGLA01G0104900 I 0.707
OPUNC01G12250 Oryza punctata OPUNC01G12250 I 0.707
ONIVA01G14890 Oryza nivara ONIVA01G14890 I 0.707
OS01G0298400 Oryza sativa OS01G0298400 I 0.707
OGLUM01G13990 Oryza glumaepatula OGLUM01G13990 I 0.707
OBART01G12500 Oryza barthii OBART01G12500 I 0.707
ORUFI01G13460 Oryza rufipogon ORUFI01G13460 I 0.707
Bo3g055110 Brassica oleracea Bo3g055110 I 0.706
GLYMA19G40650 Glycine max GLYMA19G40650 I 0.705
GSMUA_Achr1G27270_001 Musa acuminata GSMUA_Achr1G27270_001 I 0.705
OB12G22880 Oryza brachyantha OB12G22880 I 0.704
GSMUA_Achr8G10800_001 Musa acuminata GSMUA_Achr8G10800_001 I 0.704
ORGLA12G0140200 Oryza glaberrima ORGLA12G0140200 I 0.704
Pavir.Cb00499 Panicum virgatum Pavir.Cb00499 I 0.704
BGIOSGA035999 Oryza indica BGIOSGA035999 I 0.704
Si022831m.g Setaria italica Si022831m.g I 0.704
ORUFI12G17730 Oryza rufipogon ORUFI12G17730 I 0.704
GRMZM2G160840 Zea mays GRMZM2G160840 I 0.704
Sb08g018370 Sorghum bicolor Sb08g018370 I 0.704
GRMZM2G143046 Zea mays GRMZM2G143046 I 0.704
Traes_2AS_25C93FD29 Triticum aestivum Traes_2AS_25C93FD29 I 0.702
Traes_2AS_25C93FD291 Triticum aestivum Traes_2AS_25C93FD291 I 0.702
Traes_2DS_61B920833 Triticum aestivum Traes_2DS_61B920833 I 0.702
Traes_2BS_E8D2BD66E Triticum aestivum Traes_2BS_E8D2BD66E I 0.702
GSMUA_Achr11G20830_001 Musa acuminata GSMUA_Achr11G20830_001 I 0.702
OB11G27320 Oryza brachyantha OB11G27320 I 0.701
F775_17094 Aegilops tauschii F775_17094 I 0.701
JAMYB Oryza sativa OS11G0684000 I 0.701
Pm012912 Prunus mume Pm012912 I 0.701
Traes_4BS_F83CB32DD Triticum aestivum Traes_4BS_F83CB32DD I 0.701
Traes_4DS_2A5B4C4C4 Triticum aestivum Traes_4DS_2A5B4C4C4 I 0.701
PRUPE_ppa015973mg Prunus persica PRUPE_ppa015973mg I 0.701
ORUFI11G24630 Oryza rufipogon ORUFI11G24630 I 0.701
LPERR07G23760 Leersia perrieri LPERR07G23760 I 0.700
GSMUA_Achr3G08370_001 Musa acuminata GSMUA_Achr3G08370_001 I 0.698
Sb03g012310 Sorghum bicolor Sb03g012310 I 0.698
Sb01g037110 Sorghum bicolor Sb01g037110 I 0.697
GRMZM2G134279 Zea mays GRMZM2G134279 I 0.697
Cla015409 Citrullus lanatus Cla015409 I 0.696
GSMUA_AchrUn_randomG08600_001 Musa acuminata GSMUA_AchrUn_randomG08600_001 I 0.696
Bo5g155050 Brassica oleracea Bo5g155050 I 0.696
GSMUA_Achr11G16130_001 Musa acuminata GSMUA_Achr11G16130_001 I 0.696
Si030584m.g Setaria italica Si030584m.g I 0.695
Bostr.1460s0057 Boechera stricta Bostr.1460s0057 I 0.695
Cagra.1561s0019 Capsella grandiflora Cagra.1561s0019 I 0.695
Sb09g002680 Sorghum bicolor Sb09g002680 I 0.695
Carubv10016245m.g Capsella rubella Carubv10016245m.g I 0.695
BRADI4G04627 Brachypodium distachyon BRADI4G04627 I 0.695
ATMYB57 Arabidopsis lyrata Al_scaffold_0003_59 I 0.695
PGSC0003DMG401004611 Solanum tuberosum PGSC0003DMG401004611 I 0.694
Pavir.Ea00964 Panicum virgatum Pavir.Ea00964 I 0.694
GRMZM2G047600 Zea mays GRMZM2G047600 I 0.693
Traes_4AS_E4294BADC Triticum aestivum Traes_4AS_E4294BADC I 0.692
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.692
Traes_4DL_9023F3504 Triticum aestivum Traes_4DL_9023F3504 I 0.692
BRADI1G64140 Brachypodium distachyon BRADI1G64140 I 0.692
OB07G32480 Oryza brachyantha OB07G32480 I 0.692
SapurV1A.0294s0070 Salix purpurea SapurV1A.0294s0070 I 0.691
OB01G22230 Oryza brachyantha OB01G22230 I 0.690
mgf000555m Mimulus guttatus mgf000555m I 0.690
BRADI2G11430 Brachypodium distachyon BRADI2G11430 I 0.690
GSMUA_Achr8G29910_001 Musa acuminata GSMUA_Achr8G29910_001 I 0.689
Pavir.Eb01219 Panicum virgatum Pavir.Eb01219 I 0.688
ORUFI05G02420 Oryza rufipogon ORUFI05G02420 I 0.686
ORGLA05G0022200 Oryza glaberrima ORGLA05G0022200 I 0.686
OPUNC05G02190 Oryza punctata OPUNC05G02190 I 0.686
LPERR01G11480 Leersia perrieri LPERR01G11480 I 0.686
OB05G12230 Oryza brachyantha OB05G12230 I 0.686
OGLUM05G02350 Oryza glumaepatula OGLUM05G02350 I 0.686
ONIVA05G02220 Oryza nivara ONIVA05G02220 I 0.686
BGIOSGA018863 Oryza indica BGIOSGA018863 I 0.686
GRMZM2G131442 Zea mays GRMZM2G131442 I 0.685
Cucsa.128620 Cucumis sativus Cucsa.128620 I 0.685
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.685
Sb05g026820 Sorghum bicolor Sb05g026820 I 0.685
ATMYB2 Vitis vinifera VIT_07s0005g01950 I 0.685
Gorai.008G287100 Gossypium raimondii Gorai.008G287100 I 0.685
MTR_1g086510 Medicago truncatula MTR_1g086510 I 0.683
Solyc12g099120.1 Solanum lycopersicum Solyc12g099120.1 I 0.683
F775_14949 Aegilops tauschii F775_14949 I 0.683
Ca_03536 Cicer arietinum Ca_03536 I 0.683
Traes_3DL_429583AEC Triticum aestivum Traes_3DL_429583AEC I 0.682
F775_02242 Aegilops tauschii F775_02242 I 0.682
Cucsa.011440 Cucumis sativus Cucsa.011440 I 0.681
GLYMA03G38040 Glycine max GLYMA03G38040 I 0.681
Traes_1AS_36AF74187 Triticum aestivum Traes_1AS_36AF74187 I 0.679
Eucgr.J02217 Eucalyptus grandis Eucgr.J02217 I 0.679
MTR_6g006030 Medicago truncatula MTR_6g006030 I 0.679
Ciclev10016820m.g Citrus clementina Ciclev10016820m.g I 0.679
orange1.1g045384m.g Citrus sinensis orange1.1g045384m.g I 0.679
SapurV1A.0014s0140 Salix purpurea SapurV1A.0014s0140 I 0.679
GSMUA_Achr3G12730_001 Musa acuminata GSMUA_Achr3G12730_001 I 0.679
GSMUA_Achr5G21090_001 Musa acuminata GSMUA_Achr5G21090_001 I 0.678
VIT_05s0077g00500 Vitis vinifera VIT_05s0077g00500 I 0.678
GLYMA10G01330 Glycine max GLYMA10G01330 I 0.678
MYB57 Arabidopsis thaliana AT3G01530 D 0.678
Bostr.7200s0008 Boechera stricta Bostr.7200s0008 I 0.677
Carubv10007254m.g Capsella rubella Carubv10007254m.g I 0.677
Thhalv10027930m.g Eutrema salsugineum Thhalv10027930m.g I 0.677
TCM_016901 Theobroma cacao TCM_016901 I 0.677
Gorai.006G030800 Gossypium raimondii Gorai.006G030800 I 0.677
Gorai.001G263200 Gossypium raimondii Gorai.001G263200 I 0.677
Pm015692 Prunus mume Pm015692 I 0.677
GLYMA19G14230 Glycine max GLYMA19G14230 I 0.677
PRUPE_ppa011751mg Prunus persica PRUPE_ppa011751mg I 0.677
GLYMA16G07960 Glycine max GLYMA16G07960 I 0.677
Lus10022259.g Linum usitatissimum Lus10022259.g I 0.677
GLYMA19G14270 Glycine max GLYMA19G14270 I 0.676
Solyc02g067760.2 Solanum lycopersicum Solyc02g067760.2 I 0.676
Si026574m.g Setaria italica Si026574m.g I 0.676
POPTR_0002s19250 Populus trichocarpa POPTR_0002s19250 I 0.676
Si002446m.g Setaria italica Si002446m.g I 0.676
GRMZM2G143328 Zea mays GRMZM2G143328 I 0.675
Aquca_003_00440 Aquilegia coerulea Aquca_003_00440 I 0.675
PK21537.1 Cannabis sativa PK21537.1 I 0.675
gene05018-v1.0-hybrid Fragaria vesca gene05018-v1.0-hybrid I 0.675
Gorai.005G068900 Gossypium raimondii Gorai.005G068900 I 0.675
Gorai.011G203900 Gossypium raimondii Gorai.011G203900 I 0.675
MDP0000274300 Malus domestica MDP0000274300 I 0.675
BRADI2G38560 Brachypodium distachyon BRADI2G38560 I 0.675
Solyc01g057910.2 Solanum lycopersicum Solyc01g057910.2 I 0.675
evm.TU.contig_30289.2 Carica papaya evm.TU.contig_30289.2 I 0.675
Eucgr.I01782 Eucalyptus grandis Eucgr.I01782 I 0.675
mgf015990m Mimulus guttatus mgf015990m I 0.675
PRUPE_ppa025672mg Prunus persica PRUPE_ppa025672mg I 0.675
PGSC0003DMG400008761 Solanum tuberosum PGSC0003DMG400008761 I 0.675
BRADI2G44770 Brachypodium distachyon BRADI2G44770 I 0.674
PGSC0003DMG400000485 Solanum tuberosum PGSC0003DMG400000485 I 0.674
GLYMA19G00930 Glycine max GLYMA19G00930 I 0.674
Gorai.006G265800 Gossypium raimondii Gorai.006G265800 I 0.674
GLYMA05G08690 Glycine max GLYMA05G08690 I 0.674
Cla010584 Citrullus lanatus Cla010584 I 0.672
GRMZM2G070849 Zea mays GRMZM2G070849 I 0.672
F775_09710 Aegilops tauschii F775_09710 I 0.671
mgf013798m Mimulus guttatus mgf013798m I 0.670
Eucgr.K03562 Eucalyptus grandis Eucgr.K03562 I 0.670
TCM_004878 Theobroma cacao TCM_004878 I 0.670
OS01G0128000 Oryza sativa OS01G0128000 I 0.670
ORUFI01G01910 Oryza rufipogon ORUFI01G01910 I 0.670
MTR_7g035075 Medicago truncatula MTR_7g035075 I 0.668
Pavir.J35999 Panicum virgatum Pavir.J35999 I 0.668
MDP0000344978 Malus domestica MDP0000344978 I 0.668
GSMUA_Achr11G04930_001 Musa acuminata GSMUA_Achr11G04930_001 I 0.668
gene28435-v1.0-hybrid Fragaria vesca gene28435-v1.0-hybrid I 0.668
evm.TU.supercontig_186.7 Carica papaya evm.TU.supercontig_186.7 I 0.668
TRIUR3_25064 Triticum urartu TRIUR3_25064 I 0.668
Lus10014557.g Linum usitatissimum Lus10014557.g I 0.668
Lus10032129.g Linum usitatissimum Lus10032129.g I 0.668
Pavir.J39490 Panicum virgatum Pavir.J39490 I 0.667
Si035722m.g Setaria italica Si035722m.g I 0.667
GRMZM2G158700 Zea mays GRMZM2G158700 I 0.667
Cucsa.339770 Cucumis sativus Cucsa.339770 I 0.667
Sb03g029050 Sorghum bicolor Sb03g029050 I 0.667
Pavir.J28445 Panicum virgatum Pavir.J28445 I 0.667
evm.TU.supercontig_145.21 Carica papaya evm.TU.supercontig_145.21 I 0.666
GLYMA15G14620 Glycine max GLYMA15G14620 I 0.666
OMERI05G02430 Oryza meridionalis OMERI05G02430 I 0.666
Bra010022 Brassica rapa Bra010022 I 0.666
Bo7g092890 Brassica oleracea Bo7g092890 I 0.666
MTR_2g033170 Medicago truncatula MTR_2g033170 I 0.666
GLYMA09G03690 Glycine max GLYMA09G03690 I 0.666
cassava39393.m1 Manihot esculenta cassava39393.m1 I 0.666
Carubv10026871m.g Capsella rubella Carubv10026871m.g I 0.666
TCM_021433 Theobroma cacao TCM_021433 I 0.666
Thhalv10004588m.g Eutrema salsugineum Thhalv10004588m.g I 0.666
Bostr.15774s0093 Boechera stricta Bostr.15774s0093 I 0.666
Cagra.3474s0016 Capsella grandiflora Cagra.3474s0016 I 0.666
MYB78 Arabidopsis lyrata fgenesh2_kg.8__837__AT5G49620.1 I 0.666
cassava33046.m1 Manihot esculenta cassava33046.m1 I 0.666
PK10896.1 Cannabis sativa PK10896.1 I 0.666
Bra010021 Brassica rapa Bra010021 I 0.666
Ca_08069 Cicer arietinum Ca_08069 I 0.666
GSMUA_Achr7G05570_001 Musa acuminata GSMUA_Achr7G05570_001 I 0.665
evm.TU.supercontig_49.71 Carica papaya evm.TU.supercontig_49.71 I 0.665
GSMUA_Achr9G16640_001 Musa acuminata GSMUA_Achr9G16640_001 I 0.664
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.664
MLOC_5568 Hordeum vulgare MLOC_5568 I 0.664
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.664
SapurV1A.0571s0200 Salix purpurea SapurV1A.0571s0200 I 0.664
GLYMA10G01340 Glycine max GLYMA10G01340 I 0.664
Bra039108 Brassica rapa Bra039108 I 0.663
MYB05_ANTMA Antirrhinum majus MYB05_ANTMA D 0.663
GLYMA17G04171 Glycine max GLYMA17G04171 I 0.662
Bra040274 Brassica rapa Bra040274 I 0.661
Bostr.2570s0008 Boechera stricta Bostr.2570s0008 I 0.661
Cagra.9553s0006 Capsella grandiflora Cagra.9553s0006 I 0.661
MYB108 Arabidopsis lyrata fgenesh2_kg.3__656__AT3G06490.1 I 0.661
Cla017610 Citrullus lanatus Cla017610 I 0.661
30076.m004607 Ricinus communis 30076.m004607 I 0.661
Cucsa.300720 Cucumis sativus Cucsa.300720 I 0.661
Carubv10014195m.g Capsella rubella Carubv10014195m.g I 0.661
Pavir.J16675 Panicum virgatum Pavir.J16675 I 0.661
Bra029582 Brassica rapa Bra029582 I 0.661
Bra020624 Brassica rapa Bra020624 I 0.661
Bo5g143460 Brassica oleracea Bo5g143460 I 0.661
GSMUA_AchrUn_randomG00010_001 Musa acuminata GSMUA_AchrUn_randomG00010_001 I 0.661
MYB108 Arabidopsis thaliana AT3G06490 D 0.661
Bra001202 Brassica rapa Bra001202 I 0.661
Pavir.J11802 Panicum virgatum Pavir.J11802 I 0.661
Bo2g151810 Brassica oleracea Bo2g151810 I 0.661
Bo1g147890 Brassica oleracea Bo1g147890 I 0.661