Pavir.Ia03281 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ia03281 T289261_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.708 0.802
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.708 0.802
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.708 0.802
MYB61
M07002_2.00 		Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND		 Dap-seq
OMalley et al.(2016)
MYB61_col_a 		0.675 0.753
MYB61
M07003_2.00 		Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN		 Dap-seq
OMalley et al.(2016)
MYB61_colamp_a 		0.675 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03281.1.p Myb 1 36
Pavir.Ia03281.1.p Myb 42 87

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J03230 Panicum virgatum Pavir.J03230 I 0.817
Si036638m.g Setaria italica Si036638m.g I 0.817
GRMZM2G147698 Zea mays GRMZM2G147698 I 0.811
BGIOSGA010658 Oryza indica BGIOSGA010658 I 0.787
Sb01g034270 Sorghum bicolor Sb01g034270 I 0.787
OMERI03G17220 Oryza meridionalis OMERI03G17220 I 0.787
OPUNC07G22080 Oryza punctata OPUNC07G22080 I 0.771
ORGLA07G0264800 Oryza glaberrima ORGLA07G0264800 I 0.771
ONIVA02G07540 Oryza nivara ONIVA02G07540 I 0.771
BGIOSGA026208 Oryza indica BGIOSGA026208 I 0.771
ORUFI07G24600 Oryza rufipogon ORUFI07G24600 I 0.771
Si029872m.g Setaria italica Si029872m.g I 0.771
LPERR07G20400 Leersia perrieri LPERR07G20400 I 0.771
OGLUM07G23470 Oryza glumaepatula OGLUM07G23470 I 0.771
OMERI07G19830 Oryza meridionalis OMERI07G19830 I 0.771
OPUNC03G17950 Oryza punctata OPUNC03G17950 I 0.767
Sb02g040480 Sorghum bicolor Sb02g040480 I 0.764
PGSC0003DMG400015767 Solanum tuberosum PGSC0003DMG400015767 I 0.758
F775_18488 Aegilops tauschii F775_18488 I 0.757
TRIUR3_20789 Triticum urartu TRIUR3_20789 I 0.757
Traes_7DL_AD4395F8F Triticum aestivum Traes_7DL_AD4395F8F I 0.757
MLOC_37780 Hordeum vulgare MLOC_37780 I 0.757
Traes_7AL_0BCF482E8 Triticum aestivum Traes_7AL_0BCF482E8 I 0.757
Aquca_003_00245 Aquilegia coerulea Aquca_003_00245 I 0.755
GRMZM2G150841 Zea mays GRMZM2G150841 I 0.754
GSMUA_Achr3G12200_001 Musa acuminata GSMUA_Achr3G12200_001 I 0.752
Solyc01g102340.2 Solanum lycopersicum Solyc01g102340.2 I 0.752
PGSC0003DMG400018279 Solanum tuberosum PGSC0003DMG400018279 I 0.752
mgf003709m Mimulus guttatus mgf003709m I 0.751
Solyc10g044680.1 Solanum lycopersicum Solyc10g044680.1 I 0.748
POPTR_0014s10680 Populus trichocarpa POPTR_0014s10680 I 0.745
MTR_7g110830 Medicago truncatula MTR_7g110830 I 0.745
GLYMA10G27940 Glycine max GLYMA10G27940 I 0.745
Ciclev10020144m.g Citrus clementina Ciclev10020144m.g I 0.745
SapurV1A.0321s0070 Salix purpurea SapurV1A.0321s0070 I 0.745
TCM_004965 Theobroma cacao TCM_004965 I 0.745
SapurV1A.3474s0020 Salix purpurea SapurV1A.3474s0020 I 0.745
GLYMA03G38410 Glycine max GLYMA03G38410 I 0.745
Gorai.004G147600 Gossypium raimondii Gorai.004G147600 I 0.745
cassava33008.m1 Manihot esculenta cassava33008.m1 I 0.745
Gorai.007G118200 Gossypium raimondii Gorai.007G118200 I 0.745
chr5.CM0048.320.nd Lotus japonicus chr5.CM0048.320.nd I 0.745
Gorai.001G148500 Gossypium raimondii Gorai.001G148500 I 0.745
orange1.1g013300m.g Citrus sinensis orange1.1g013300m.g I 0.745
GLYMA02G00960 Glycine max GLYMA02G00960 I 0.745
Ca_03564 Cicer arietinum Ca_03564 I 0.745
Traes_3DL_46F83C41D Triticum aestivum Traes_3DL_46F83C41D N 0.744
OPUNC05G02540 Oryza punctata OPUNC05G02540 I 0.742
LPERR05G02400 Leersia perrieri LPERR05G02400 I 0.742
OLONG_008768 Oryza longistaminata OLONG_008768 I 0.742
BGIOSGA019160 Oryza indica BGIOSGA019160 I 0.742
ONIVA05G02580 Oryza nivara ONIVA05G02580 I 0.742
OMERI05G02610 Oryza meridionalis OMERI05G02610 I 0.742
OGLUM05G02680 Oryza glumaepatula OGLUM05G02680 I 0.742
ORGLA05G0025500 Oryza glaberrima ORGLA05G0025500 I 0.742
Pavir.J40848 Panicum virgatum Pavir.J40848 I 0.742
ORUFI05G02790 Oryza rufipogon ORUFI05G02790 I 0.742
OBART05G02690 Oryza barthii OBART05G02690 I 0.742
OS05G0140100 Oryza sativa OS05G0140100 I 0.742
MTR_1g085640 Medicago truncatula MTR_1g085640 I 0.742
OB05G12630 Oryza brachyantha OB05G12630 I 0.742
Sb09g003100 Sorghum bicolor Sb09g003100 I 0.742
GRMZM2G127490 Zea mays GRMZM2G127490 I 0.742
GRMZM2G171781 Zea mays GRMZM2G171781 I 0.742
Si022113m.g Setaria italica Si022113m.g I 0.742
Eucgr.B02197 Eucalyptus grandis Eucgr.B02197 I 0.741
mgf024107m Mimulus guttatus mgf024107m I 0.740
OS03G0371800 Oryza sativa OS03G0371800 I 0.739
ORGLA03G0178400 Oryza glaberrima ORGLA03G0178400 I 0.739
OGLUM03G19500 Oryza glumaepatula OGLUM03G19500 I 0.739
VIT_14s0060g00240 Vitis vinifera VIT_14s0060g00240 I 0.739
Pavir.J31344 Panicum virgatum Pavir.J31344 I 0.739
LPERR03G16350 Leersia perrieri LPERR03G16350 I 0.739
ONIVA04G28760 Oryza nivara ONIVA04G28760 I 0.739
GSMUA_Achr2G18440_001 Musa acuminata GSMUA_Achr2G18440_001 I 0.737
GSMUA_Achr5G18400_001 Musa acuminata GSMUA_Achr5G18400_001 I 0.737
Gorai.008G133700 Gossypium raimondii Gorai.008G133700 I 0.736
GLYMA19G41010 Glycine max GLYMA19G41010 I 0.736
GSMUA_Achr4G19560_001 Musa acuminata GSMUA_Achr4G19560_001 I 0.735
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.735
GSMUA_Achr11G00430_001 Musa acuminata GSMUA_Achr11G00430_001 I 0.733
chr5.CM0048.130.nc Lotus japonicus chr5.CM0048.130.nc I 0.731
BRADI1G20250 Brachypodium distachyon BRADI1G20250 I 0.731
GSMUA_Achr3G24580_001 Musa acuminata GSMUA_Achr3G24580_001 I 0.730
AMTR_s00045p00146180 Amborella trichopoda AMTR_s00045p00146180 I 0.730
Lus10038022.g Linum usitatissimum Lus10038022.g I 0.729
VIT_07s0005g02480 Vitis vinifera VIT_07s0005g02480 I 0.727
Pm003267 Prunus mume Pm003267 I 0.727
cassava12868.valid.m1 Manihot esculenta cassava12868.valid.m1 I 0.727
BRADI2G36730 Brachypodium distachyon BRADI2G36730 I 0.727
gene22961-v1.0-hybrid Fragaria vesca gene22961-v1.0-hybrid I 0.727
PRUPE_ppa019718mg Prunus persica PRUPE_ppa019718mg I 0.727
MDP0000653903 Malus domestica MDP0000653903 I 0.727
POPTR_0002s18700 Populus trichocarpa POPTR_0002s18700 I 0.727
TCM_026853 Theobroma cacao TCM_026853 I 0.727
PK03176.1 Cannabis sativa PK03176.1 I 0.727
BGIOSGA001872 Oryza indica BGIOSGA001872 I 0.726
OPUNC01G11600 Oryza punctata OPUNC01G11600 I 0.726
OS01G0285300 Oryza sativa OS01G0285300 I 0.726
ORUFI01G12800 Oryza rufipogon ORUFI01G12800 I 0.726
ORGLA01G0100400 Oryza glaberrima ORGLA01G0100400 I 0.726
ONIVA01G14120 Oryza nivara ONIVA01G14120 I 0.726
OBART01G11910 Oryza barthii OBART01G11910 I 0.726
LPERR01G10930 Leersia perrieri LPERR01G10930 I 0.726
OLONG_014417 Oryza longistaminata OLONG_014417 I 0.726
OB01G21720 Oryza brachyantha OB01G21720 I 0.726
OGLUM01G13340 Oryza glumaepatula OGLUM01G13340 I 0.726
Traes_1DS_5BAD8947E Triticum aestivum Traes_1DS_5BAD8947E I 0.724
Traes_1BS_92EA1F290 Triticum aestivum Traes_1BS_92EA1F290 I 0.724
MDP0000601420 Malus domestica MDP0000601420 I 0.724
MDP0000932804 Malus domestica MDP0000932804 I 0.724
F775_28584 Aegilops tauschii F775_28584 I 0.724
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.724
Traes_1AS_1EE692FDC Triticum aestivum Traes_1AS_1EE692FDC I 0.724
GSMUA_Achr11G15910_001 Musa acuminata GSMUA_Achr11G15910_001 I 0.723
Sb03g011640 Sorghum bicolor Sb03g011640 I 0.719
Pavir.Eb01178 Panicum virgatum Pavir.Eb01178 I 0.719
Si001565m.g Setaria italica Si001565m.g I 0.719
Pavir.Ea01054 Panicum virgatum Pavir.Ea01054 I 0.719
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.718
Cla005219 Citrullus lanatus Cla005219 I 0.718
MTR_1g085040 Medicago truncatula MTR_1g085040 I 0.717
cassava17679.valid.m1 Manihot esculenta cassava17679.valid.m1 I 0.717
Ca_03589 Cicer arietinum Ca_03589 I 0.717
SapurV1A.1077s0040 Salix purpurea SapurV1A.1077s0040 I 0.715
Ca_01055 Cicer arietinum Ca_01055 I 0.715
Traes_2AS_731C703DE Triticum aestivum Traes_2AS_731C703DE I 0.714
Traes_2DS_3569AEDFB Triticum aestivum Traes_2DS_3569AEDFB I 0.714
Traes_2BS_E1E541767 Triticum aestivum Traes_2BS_E1E541767 I 0.714
GSMUA_Achr2G07930_001 Musa acuminata GSMUA_Achr2G07930_001 I 0.713
GSMUA_Achr1G18990_001 Musa acuminata GSMUA_Achr1G18990_001 I 0.713
GLYMA10G28250 Glycine max GLYMA10G28250 I 0.711
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I 0.711
GSMUA_Achr2G01830_001 Musa acuminata GSMUA_Achr2G01830_001 I 0.709
Bra036317 Brassica rapa Bra036317 I 0.708
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I 0.708
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I 0.708
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I 0.708
Bo9g004210 Brassica oleracea Bo9g004210 I 0.708
MYB55 Arabidopsis thaliana AT4G01680 D 0.708
Carubv10001308m.g Capsella rubella Carubv10001308m.g I 0.708
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.705
SapurV1A.1016s0030 Salix purpurea SapurV1A.1016s0030 I 0.704
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.704
Pm012272 Prunus mume Pm012272 I 0.703
ORUFI09G18880 Oryza rufipogon ORUFI09G18880 I 0.703
AtMYB50 Arabidopsis thaliana AT1G57560 I 0.703
evm.TU.supercontig_57.32 Carica papaya evm.TU.supercontig_57.32 I 0.703
LjSGA_026563.1 Lotus japonicus LjSGA_026563.1 I 0.703
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.703
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I 0.703
Bostr.30057s0004 Boechera stricta Bostr.30057s0004 I 0.699
e_gw1.24.66.1 Physcomitrella patens e_gw1.24.66.1 I 0.699
fgenesh1_pg.scaffold_189000016 Physcomitrella patens fgenesh1_pg.scaffold_189000016 I 0.699
GRMZM2G017520 Zea mays GRMZM2G017520 I 0.699
POPTR_0005s00340 Populus trichocarpa POPTR_0005s00340 I 0.698
Bra031669 Brassica rapa Bra031669 I 0.697
Bo8g111090 Brassica oleracea Bo8g111090 I 0.697
chr1.CM0122.20.nc Lotus japonicus chr1.CM0122.20.nc I 0.695
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I 0.694
Eucgr.K00555 Eucalyptus grandis Eucgr.K00555 I 0.693
GLYMA19G41250 Glycine max GLYMA19G41250 I 0.692
Ca_01072 Cicer arietinum Ca_01072 I 0.692
Traes_7AS_2EE7C2628 Triticum aestivum Traes_7AS_2EE7C2628 I 0.692
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.691
GSMUA_AchrUn_randomG00040_001 Musa acuminata GSMUA_AchrUn_randomG00040_001 I 0.690
Bra020016 Brassica rapa Bra020016 I 0.689
GLYMA20G22230 Glycine max GLYMA20G22230 I 0.689
Eucgr.A00996 Eucalyptus grandis Eucgr.A00996 I 0.689
GLYMA03G38660 Glycine max GLYMA03G38660 I 0.689
Cucsa.090310 Cucumis sativus Cucsa.090310 I 0.688
Cla020303 Citrullus lanatus Cla020303 I 0.688
OB03G28290 Oryza brachyantha OB03G28290 I 0.687
SapurV1A.0264s0440 Salix purpurea SapurV1A.0264s0440 I 0.686
GSMUA_Achr8G18730_001 Musa acuminata GSMUA_Achr8G18730_001 I 0.686
POPTR_0013s00290 Populus trichocarpa POPTR_0013s00290 I 0.682
SapurV1A.0442s0250 Salix purpurea SapurV1A.0442s0250 I 0.682
SELMODRAFT_437219 Selaginella moellendorffii SELMODRAFT_437219 I 0.679
GSMUA_Achr7G17250_001 Musa acuminata GSMUA_Achr7G17250_001 I 0.679
Thhalv10028864m.g Eutrema salsugineum Thhalv10028864m.g I 0.679
PDK_20s1308492g002 Phoenix dactylifera PDK_20s1308492g002 N 0.678
gw1.149.61.1 Physcomitrella patens gw1.149.61.1 I 0.678
GSMUA_AchrUn_randomG22350_001 Musa acuminata GSMUA_AchrUn_randomG22350_001 N 0.676
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.676
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.676
OS01G0709000 Oryza sativa OS01G0709000 I 0.676
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I 0.676
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.676
Carubv10009497m.g Capsella rubella Carubv10009497m.g I 0.675
Bostr.25494s0012 Boechera stricta Bostr.25494s0012 I 0.675
Cagra.4395s0139 Capsella grandiflora Cagra.4395s0139 I 0.675
MYB61 Arabidopsis lyrata scaffold_100991.1 I 0.675
Bra030783 Brassica rapa Bra030783 I 0.675
MYB61 Arabidopsis thaliana AT1G09540 D 0.675
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.675
Cla001724 Citrullus lanatus Cla001724 I 0.673
MYB83 Vitis vinifera VIT_13s0064g00960 I 0.673
Lus10031758.g Linum usitatissimum Lus10031758.g I 0.672
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.671
Gorai.008G277900 Gossypium raimondii Gorai.008G277900 I 0.670
Thhalv10008000m.g Eutrema salsugineum Thhalv10008000m.g I 0.670
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.669
gw1.277.32.1 Physcomitrella patens gw1.277.32.1 I 0.669
Cla012793 Citrullus lanatus Cla012793 I 0.669
OPUNC01G19230 Oryza punctata OPUNC01G19230 I 0.668
Pavir.J20716 Panicum virgatum Pavir.J20716 I 0.668
Si002220m.g Setaria italica Si002220m.g I 0.668
Pavir.J18139 Panicum virgatum Pavir.J18139 I 0.668
Sb03g024500 Sorghum bicolor Sb03g024500 I 0.668
Pm025103 Prunus mume Pm025103 I 0.668
PRUPE_ppa019522mg Prunus persica PRUPE_ppa019522mg I 0.668
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.667
Bo9g010860 Brassica oleracea Bo9g010860 I 0.667
OB01G37410 Oryza brachyantha OB01G37410 I 0.667
GLYMA09G25655 Glycine max GLYMA09G25655 I 0.667
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.667
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.667
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I 0.667
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.667
Bra036588 Brassica rapa Bra036588 I 0.667
orange1.1g014135m.g Citrus sinensis orange1.1g014135m.g I 0.667
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.667
Bo7g095130 Brassica oleracea Bo7g095130 I 0.667
MYB86 Arabidopsis thaliana AT5G26660 I 0.667
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.667
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.667
Bo2g156300 Brassica oleracea Bo2g156300 I 0.667
GRMZM2G064744 Zea mays GRMZM2G064744 I 0.665
BRADI2G40620 Brachypodium distachyon BRADI2G40620 I 0.665
MLOC_18177 Hordeum vulgare MLOC_18177 I 0.664
TRIUR3_25230 Triticum urartu TRIUR3_25230 I 0.664
GRMZM2G088783 Zea mays GRMZM2G088783 I 0.664
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I 0.664
Si002319m.g Setaria italica Si002319m.g I 0.664
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.664
F775_17110 Aegilops tauschii F775_17110 I 0.664
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.664
MTR_8g017500 Medicago truncatula MTR_8g017500 I 0.663
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.663
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.663
BGIOSGA001460 Oryza indica BGIOSGA001460 I 0.662
ORUFI01G21210 Oryza rufipogon ORUFI01G21210 I 0.662
TRIUR3_27020 Triticum urartu TRIUR3_27020 I 0.661
MLOC_6156 Hordeum vulgare MLOC_6156 I 0.661
MDP0000175918 Malus domestica MDP0000175918 I 0.661
POPTR_0010s00690 Populus trichocarpa POPTR_0010s00690 I 0.661
F775_01821 Aegilops tauschii F775_01821 I 0.661
MTR_4g485530 Medicago truncatula MTR_4g485530 I 0.661
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.661
TRAES3BF071400020CFD_g Triticum aestivum TRAES3BF071400020CFD_g I 0.661