Pavir.J33236 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J33236 T289452_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.668 0.753
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.661 0.753
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.661 0.753
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.661 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33236.1.p Myb 24 70
Pavir.J33236.1.p Myb 76 121

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb09g016570 Sorghum bicolor Sb09g016570 I 0.878
Si024344m.g Setaria italica Si024344m.g I 0.869
AC213884.3_FG002 Zea mays AC213884.3_FG002 N 0.846
BRADI2G28910 Brachypodium distachyon BRADI2G28910 N 0.793
ORUFI05G13850 Oryza rufipogon ORUFI05G13850 I 0.782
OMERI05G11510 Oryza meridionalis OMERI05G11510 I 0.782
ORGLA05G0109400 Oryza glaberrima ORGLA05G0109400 I 0.782
OGLUM05G13590 Oryza glumaepatula OGLUM05G13590 I 0.782
ONIVA05G13470 Oryza nivara ONIVA05G13470 I 0.782
OPUNC05G11020 Oryza punctata OPUNC05G11020 I 0.782
BGIOSGA018239 Oryza indica BGIOSGA018239 I 0.770
BGIOSGA018238 Oryza indica BGIOSGA018238 I 0.761
LPERR05G10150 Leersia perrieri LPERR05G10150 I 0.749
MLOC_26177 Hordeum vulgare MLOC_26177 N 0.731
TCM_007138 Theobroma cacao TCM_007138 I 0.727
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.717
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.703
mgf023922m Mimulus guttatus mgf023922m I 0.698
mgf014089m Mimulus guttatus mgf014089m I 0.693
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.690
TCM_000696 Theobroma cacao TCM_000696 I 0.690
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.690
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.690
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.688
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.687
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.687
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.687
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.685
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.685
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.683
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.681
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.681
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.681
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.681
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I 0.679
Bo2g167960 Brassica oleracea Bo2g167960 I 0.679
GRMZM2G369799 Zea mays GRMZM2G369799 I 0.679
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I 0.679
Bo3g153550 Brassica oleracea Bo3g153550 I 0.679
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.677
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.676
TCM_042474 Theobroma cacao TCM_042474 I 0.676
Bo7g118450 Brassica oleracea Bo7g118450 I 0.675
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.673
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.673
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.670
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.670
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.669
Cla020946 Citrullus lanatus Cla020946 I 0.669
29814.m000736 Ricinus communis 29814.m000736 I 0.669
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.669
OPUNC01G44800 Oryza punctata OPUNC01G44800 N 0.669
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.669
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.669
MYB73 Arabidopsis thaliana AT4G37260 D 0.668
Bo1g004900 Brassica oleracea Bo1g004900 I 0.668
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.668
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.668
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.668
Bra011749 Brassica rapa Bra011749 I 0.668
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.666
MDP0000232454 Malus domestica MDP0000232454 I 0.666
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.666
MDP0000196986 Malus domestica MDP0000196986 I 0.666
29970.m000987 Ricinus communis 29970.m000987 I 0.666
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.666
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.666
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.666
OS01G0977300 Oryza sativa OS01G0977300 N 0.665
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N 0.665
ORUFI01G49370 Oryza rufipogon ORUFI01G49370 N 0.665
mgf020432m Mimulus guttatus mgf020432m I 0.665
ONIVA01G52120 Oryza nivara ONIVA01G52120 N 0.665
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N 0.665
BGIOSGA000003 Oryza indica BGIOSGA000003 N 0.665
OBART01G45880 Oryza barthii OBART01G45880 N 0.665
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.664
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.664
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.663
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.663
Cla004431 Citrullus lanatus Cla004431 I 0.662
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.661
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.661
Bo7g063830 Brassica oleracea Bo7g063830 I 0.661
Bo4g151410 Brassica oleracea Bo4g151410 I 0.661
MYB44 Arabidopsis thaliana AT5G67300 D 0.661
Bra012149 Brassica rapa Bra012149 I 0.661
Bra032176 Brassica rapa Bra032176 I 0.661
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.661
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.661
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.661
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.661