CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ca02945
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ca02945
T289070_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.671
0.785
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.671
0.785
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.666
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ca02945.1.p
Myb
7
53
KGSWSPEEDSLLTSLVEQHGPHRWSLISAAIPGRSGKSCRLRWCNQL
Pavir.Ca02945.1.p
Myb
59
104
HRPFTPREDALILAAHARYGNKWATIARLLPGRTDNSIKNHWNSNL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Cb00156
Panicum virgatum
Pavir.Cb00156
I
0.909
GRMZM2G369799
Zea mays
GRMZM2G369799
I
0.891
OPUNC01G44800
Oryza punctata
OPUNC01G44800
N
0.866
OGLUM01G50230
Oryza glumaepatula
OGLUM01G50230
N
0.862
OBART01G45880
Oryza barthii
OBART01G45880
N
0.862
ORGLA01G0396300
Oryza glaberrima
ORGLA01G0396300
N
0.862
BGIOSGA000003
Oryza indica
BGIOSGA000003
N
0.862
OS01G0977300
Oryza sativa
OS01G0977300
N
0.862
ONIVA01G52120
Oryza nivara
ONIVA01G52120
N
0.862
ORUFI01G49370
Oryza rufipogon
ORUFI01G49370
N
0.862
OB01G55080
Oryza brachyantha
OB01G55080
N
0.855
Sb0088s002210
Sorghum bicolor
Sb0088s002210
N
0.855
OLONG_011153
Oryza longistaminata
OLONG_011153
N
0.839
Si022959m.g
Setaria italica
Si022959m.g
I
0.818
Traes_4AS_A79A68739
Triticum aestivum
Traes_4AS_A79A68739
N
0.778
Traes_4BL_545A5716E
Triticum aestivum
Traes_4BL_545A5716E
I
0.778
Traes_4DL_D41CB81EA
Triticum aestivum
Traes_4DL_D41CB81EA
I
0.778
Lus10040940.g
Linum usitatissimum
Lus10040940.g
I
0.743
Lus10028979.g
Linum usitatissimum
Lus10028979.g
I
0.742
Cucsa.368410
Cucumis sativus
Cucsa.368410
I
0.735
LPERR01G40230
Leersia perrieri
LPERR01G40230
I
0.726
POPTR_0008s07100
Populus trichocarpa
POPTR_0008s07100
I
0.723
29814.m000736
Ricinus communis
29814.m000736
I
0.723
SapurV1A.0650s0070
Salix purpurea
SapurV1A.0650s0070
I
0.723
cassava41257.m1
Manihot esculenta
cassava41257.m1
I
0.723
Lus10007503.g
Linum usitatissimum
Lus10007503.g
I
0.718
chr2.CM0002.110.nc
Lotus japonicus
chr2.CM0002.110.nc
I
0.713
PRUPE_ppa017892mg
Prunus persica
PRUPE_ppa017892mg
I
0.708
Gorai.012G078200
Gossypium raimondii
Gorai.012G078200
I
0.706
Cla004431
Citrullus lanatus
Cla004431
I
0.706
Ciclev10032317m.g
Citrus clementina
Ciclev10032317m.g
I
0.705
orange1.1g046570m.g
Citrus sinensis
orange1.1g046570m.g
I
0.705
TCM_042474
Theobroma cacao
TCM_042474
I
0.704
Cla020946
Citrullus lanatus
Cla020946
I
0.703
MDP0000298689
Malus domestica
MDP0000298689
I
0.703
mgf023922m
Mimulus guttatus
mgf023922m
I
0.697
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.696
mgf020432m
Mimulus guttatus
mgf020432m
I
0.696
PK01153.1
Cannabis sativa
PK01153.1
I
0.694
gene21001-v1.0-hybrid
Fragaria vesca
gene21001-v1.0-hybrid
I
0.693
Lus10010055.g
Linum usitatissimum
Lus10010055.g
I
0.692
Lus10010238.g
Linum usitatissimum
Lus10010238.g
I
0.692
Pm018951
Prunus mume
Pm018951
I
0.690
Gorai.007G055600
Gossypium raimondii
Gorai.007G055600
I
0.688
Solyc02g092930.1
Solanum lycopersicum
Solyc02g092930.1
I
0.688
TCM_000696
Theobroma cacao
TCM_000696
I
0.688
VIT_13s0067g01360
Vitis vinifera
VIT_13s0067g01360
I
0.688
PGSC0003DMG400024983
Solanum tuberosum
PGSC0003DMG400024983
I
0.688
Gorai.007G218100
Gossypium raimondii
Gorai.007G218100
I
0.688
Cucsa.352560
Cucumis sativus
Cucsa.352560
I
0.686
Bo3g153550
Brassica oleracea
Bo3g153550
I
0.683
Thhalv10025742m.g
Eutrema salsugineum
Thhalv10025742m.g
I
0.683
Ciclev10001979m.g
Citrus clementina
Ciclev10001979m.g
I
0.682
AMTR_s00007p00169630
Amborella trichopoda
AMTR_s00007p00169630
I
0.682
orange1.1g022144m.g
Citrus sinensis
orange1.1g022144m.g
I
0.682
POPTR_0014s03440
Populus trichocarpa
POPTR_0014s03440
I
0.680
PK17282.1
Cannabis sativa
PK17282.1
I
0.679
Pm005332
Prunus mume
Pm005332
I
0.679
MDP0000463846
Malus domestica
MDP0000463846
I
0.679
cassava47374.m1
Manihot esculenta
cassava47374.m1
I
0.679
Pavir.J33236
Panicum virgatum
Pavir.J33236
I
0.679
30170.m013698
Ricinus communis
30170.m013698
I
0.679
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.679
Ca_12468
Cicer arietinum
Ca_12468
I
0.679
PRUPE_ppa008979mg
Prunus persica
PRUPE_ppa008979mg
I
0.679
TCM_007138
Theobroma cacao
TCM_007138
I
0.677
MDP0000275800
Malus domestica
MDP0000275800
I
0.675
gene00185-v1.0-hybrid
Fragaria vesca
gene00185-v1.0-hybrid
I
0.674
Thhalv10000438m.g
Eutrema salsugineum
Thhalv10000438m.g
I
0.674
Bra010593
Brassica rapa
Bra010593
I
0.672
Gorai.010G023500
Gossypium raimondii
Gorai.010G023500
I
0.672
VIT_18s0001g09850
Vitis vinifera
VIT_18s0001g09850
I
0.672
gene24027-v1.0-hybrid
Fragaria vesca
gene24027-v1.0-hybrid
I
0.672
Carubv10023692m.g
Capsella rubella
Carubv10023692m.g
I
0.671
Bra032176
Brassica rapa
Bra032176
I
0.671
evm.TU.supercontig_6.98
Carica papaya
evm.TU.supercontig_6.98
I
0.671
AtMYB70
Arabidopsis lyrata
fgenesh2_kg.4__260__AT2G23290.1
I
0.671
Bostr.27895s0157
Boechera stricta
Bostr.27895s0157
I
0.671
Bo4g151410
Brassica oleracea
Bo4g151410
I
0.671
AtMYB70
Arabidopsis thaliana
AT2G23290
D
0.671
Si024344m.g
Setaria italica
Si024344m.g
I
0.670
GSMUA_Achr3G13070_001
Musa acuminata
GSMUA_Achr3G13070_001
I
0.669
Eucgr.F00002
Eucalyptus grandis
Eucgr.F00002
I
0.669
GSMUA_Achr4G20150_001
Musa acuminata
GSMUA_Achr4G20150_001
I
0.669
MYB73
Arabidopsis thaliana
AT4G37260
D
0.666
Bra011749
Brassica rapa
Bra011749
I
0.666
Bostr.7867s1585
Boechera stricta
Bostr.7867s1585
I
0.666
Cagra.1232s0025
Capsella grandiflora
Cagra.1232s0025
I
0.666
Bo1g004900
Brassica oleracea
Bo1g004900
I
0.666
Carubv10007638m.g
Capsella rubella
Carubv10007638m.g
I
0.666
GSMUA_Achr3G28230_001
Musa acuminata
GSMUA_Achr3G28230_001
I
0.665
BGIOSGA018238
Oryza indica
BGIOSGA018238
I
0.664
GLYMA17G35620
Glycine max
GLYMA17G35620
I
0.664
OGLUM05G13590
Oryza glumaepatula
OGLUM05G13590
I
0.664
ORGLA05G0109400
Oryza glaberrima
ORGLA05G0109400
I
0.664
ORUFI05G13850
Oryza rufipogon
ORUFI05G13850
I
0.664
ONIVA05G13470
Oryza nivara
ONIVA05G13470
I
0.664
OPUNC05G11020
Oryza punctata
OPUNC05G11020
I
0.664
OMERI05G11510
Oryza meridionalis
OMERI05G11510
I
0.664
POPTR_0005s18620
Populus trichocarpa
POPTR_0005s18620
I
0.663
MTR_5g016510
Medicago truncatula
MTR_5g016510
I
0.663
PRUPE_ppa008450mg
Prunus persica
PRUPE_ppa008450mg
I
0.663
cassava43120.valid.m1
Manihot esculenta
cassava43120.valid.m1
I
0.663
CM0528.210.nd
Lotus japonicus
CM0528.210.nd
I
0.663
29970.m000987
Ricinus communis
29970.m000987
I
0.663
cassava2215.valid.m1
Manihot esculenta
cassava2215.valid.m1
I
0.663
orange1.1g021071m.g
Citrus sinensis
orange1.1g021071m.g
I
0.663
Ca_02182
Cicer arietinum
Ca_02182
I
0.663
Ciclev10026107m.g
Citrus clementina
Ciclev10026107m.g
I
0.663
GLYMA05G21220
Glycine max
GLYMA05G21220
I
0.663
MDP0000232454
Malus domestica
MDP0000232454
I
0.663
MDP0000196986
Malus domestica
MDP0000196986
I
0.663
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.663
evm.TU.supercontig_21.145
Carica papaya
evm.TU.supercontig_21.145
I
0.662
POPTR_0014s02260
Populus trichocarpa
POPTR_0014s02260
I
0.662
SapurV1A.1934s0020
Salix purpurea
SapurV1A.1934s0020
I
0.662
SapurV1A.0919s0160
Salix purpurea
SapurV1A.0919s0160
I
0.662
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.662
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.662
POPTR_0002s12410
Populus trichocarpa
POPTR_0002s12410
I
0.662
SapurV1A.0167s0310
Salix purpurea
SapurV1A.0167s0310
I
0.662
Bo7g118450
Brassica oleracea
Bo7g118450
I
0.662
GSMUA_Achr1G26140_001
Musa acuminata
GSMUA_Achr1G26140_001
I
0.661