PK01153.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK01153.1 T290333_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.683 0.763
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW

WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.683 0.763
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH

DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.683 0.763
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY

RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.678 0.806
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.678 0.785
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN

NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.678 0.785
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW

WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.673 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK01153.1 Myb 13 59
PK01153.1 Myb 65 110

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.814
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.811
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.810
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.810
MDP0000298689 Malus domestica MDP0000298689 I 0.804
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.802
TCM_042474 Theobroma cacao TCM_042474 I 0.796
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.795
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.795
Cla004431 Citrullus lanatus Cla004431 I 0.793
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.791
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.786
29814.m000736 Ricinus communis 29814.m000736 I 0.786
Pm018951 Prunus mume Pm018951 I 0.778
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.777
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.777
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.777
Ca_12468 Cicer arietinum Ca_12468 I 0.775
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.759
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.755
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.754
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.754
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.743
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.741
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.732
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.729
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.729
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.729
mgf020432m Mimulus guttatus mgf020432m I 0.727
Ca_01522 Cicer arietinum Ca_01522 I 0.726
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.723
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.722
Eucgr.J00189 Eucalyptus grandis Eucgr.J00189 I 0.721
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.720
Pm005332 Prunus mume Pm005332 I 0.720
MDP0000463846 Malus domestica MDP0000463846 I 0.720
Cla020946 Citrullus lanatus Cla020946 I 0.720
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.718
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.717
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.717
30170.m013698 Ricinus communis 30170.m013698 I 0.717
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.717
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.717
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.717
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.717
Bra032176 Brassica rapa Bra032176 I 0.717
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.717
PK17282.1 Cannabis sativa PK17282.1 I 0.717
MDP0000275800 Malus domestica MDP0000275800 I 0.716
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.715
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.713
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.712
Bra007186 Brassica rapa Bra007186 I 0.710
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.710
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.709
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.708
MYB25 Arabidopsis thaliana AT2G39880 I 0.708
e_gw1.3.530.1 Coccomyxa subellipsoidea C169 e_gw1.3.530.1 N 0.707
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.707
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.707
e_gw1.3.545.1 Chlorella vulgaris e_gw1.3.545.1 N 0.707
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.707
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.706
Cla022947 Citrullus lanatus Cla022947 I 0.706
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.705
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.705
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.705
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.705
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.705
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.705
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.705
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.705
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.705
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.705
mgf023922m Mimulus guttatus mgf023922m I 0.704
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.704
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.703
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.703
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.703
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.703
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.703
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.703
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.703
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.703
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.702
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.702
mgf002573m Mimulus guttatus mgf002573m I 0.702
Ca_02182 Cicer arietinum Ca_02182 I 0.701
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.701
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.701
Bo8g090160 Brassica oleracea Bo8g090160 I 0.701
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.701
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.701
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.700
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.699
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.696
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.696
Bo3g153550 Brassica oleracea Bo3g153550 I 0.696
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.695
MDP0000196986 Malus domestica MDP0000196986 I 0.695
MDP0000232454 Malus domestica MDP0000232454 I 0.695
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.695
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.695
29970.m000987 Ricinus communis 29970.m000987 I 0.695
TCM_000696 Theobroma cacao TCM_000696 I 0.695
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.695
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.694
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I 0.694
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I 0.694
GRMZM2G369799 Zea mays GRMZM2G369799 I 0.694
30170.m013927 Ricinus communis 30170.m013927 I 0.693
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.693
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.693
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.693
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.693
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.693
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.693
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.693
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.693
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.693
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.693
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.693
Cla014191 Citrullus lanatus Cla014191 I 0.693
mgf014089m Mimulus guttatus mgf014089m I 0.692
Bo4g151410 Brassica oleracea Bo4g151410 I 0.692
TCM_007138 Theobroma cacao TCM_007138 I 0.691
Cla021015 Citrullus lanatus Cla021015 I 0.691
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.690
MYB109 Arabidopsis thaliana AT3G55730 I 0.690
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.689
Bra010593 Brassica rapa Bra010593 I 0.689
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.688
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.688
PK16550.1 Cannabis sativa PK16550.1 I 0.688
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.687
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.687
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.687
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.687
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.687
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.687
TCM_021796 Theobroma cacao TCM_021796 I 0.687
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.687
Pm002576 Prunus mume Pm002576 I 0.687
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.686
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.686
Cla006872 Citrullus lanatus Cla006872 I 0.685
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.685
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.685
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I 0.685
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.685
MDP0000319124 Malus domestica MDP0000319124 I 0.684
MDP0000478512 Malus domestica MDP0000478512 I 0.684
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.684
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.684
cassava16103.m1 Manihot esculenta cassava16103.m1 I 0.684
MDP0000203733 Malus domestica MDP0000203733 I 0.684
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.684
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.683
Bo7g118450 Brassica oleracea Bo7g118450 I 0.683
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.683
Bo7g063830 Brassica oleracea Bo7g063830 I 0.683
Bra012149 Brassica rapa Bra012149 I 0.683
MYB44 Arabidopsis thaliana AT5G67300 D 0.683
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.683
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.683
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.683
cassava46434.m1 Manihot esculenta cassava46434.m1 I 0.682
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.680
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.679
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.678
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.678
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.678
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.678
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.678
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.678
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.678
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.678
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.678
PK28565.1 Cannabis sativa PK28565.1 D 0.678
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.678
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.676
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.676
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.676
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.676
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.676
Pm005220 Prunus mume Pm005220 I 0.676
MDP0000894463 Malus domestica MDP0000894463 I 0.676
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.675
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.675
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.675
Bo2g167960 Brassica oleracea Bo2g167960 I 0.674
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.674
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.673
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.673
Bra011749 Brassica rapa Bra011749 I 0.673
Bo1g004900 Brassica oleracea Bo1g004900 I 0.673
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.673
MYB73 Arabidopsis thaliana AT4G37260 D 0.673
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.672
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.672
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.672
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.672
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.672
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.672
OS09G0106700 Oryza sativa OS09G0106700 I 0.672
Si032789m.g Setaria italica Si032789m.g I 0.672
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.672
OBART09G00310 Oryza barthii OBART09G00310 I 0.672
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.672
OB09G10200 Oryza brachyantha OB09G10200 I 0.672
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.672
mgf018580m Mimulus guttatus mgf018580m I 0.671
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.671
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.670
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.669
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.669
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.668
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.668
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.667
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I 0.666
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.665
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.664
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.664
Bo4g025810 Brassica oleracea Bo4g025810 I 0.664
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N 0.663
OPUNC01G44800 Oryza punctata OPUNC01G44800 N 0.663
ORUFI01G49370 Oryza rufipogon ORUFI01G49370 N 0.663
OS01G0977300 Oryza sativa OS01G0977300 N 0.663
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.663
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.663
ONIVA01G52120 Oryza nivara ONIVA01G52120 N 0.663
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N 0.663
OBART01G45880 Oryza barthii OBART01G45880 N 0.663
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.663
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.663
BGIOSGA000003 Oryza indica BGIOSGA000003 N 0.663
Si022959m.g Setaria italica Si022959m.g I 0.662
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.662
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.661
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.661