CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NAC92
(
Arabidopsis thaliana
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
AT5G39610
T292109_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC92
M00730_2.00
Arabidopsis thaliana
DYACGNHAN
NTDNCGTRH
PBM
Chang et al.(2013)
pTH7335
(Direct)
(Direct)
NAC92
M00979_2.00
Arabidopsis thaliana
NNDYACGBHA
TDVCGTRHNN
PBM
Lindemose et al.(2014)
ANAC092
(Direct)
(Direct)
NAC92
M07234_2.00
Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY
RTWRCKTGHDNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a
(Direct)
(Direct)
NAC92
M07235_2.00
Arabidopsis thaliana
WRCKTGTNNNDCAMG
CKTGHNNNACAMGYW
Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC59
M11080_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC059_01
0.965
0.939
NAC100
M02375_2.00
Arabidopsis thaliana
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH7239
0.954
0.895
ANAC100
M02377_2.00
Arabidopsis lyrata
DYACGYHANN
NNTDRCGTRH
PBM
Weirauch et al.(2014)
pTH9234
0.949
0.886
NAC079
M02373_2.00
Arabidopsis thaliana
TTGCGTRY
RYACGCAA
PBM
Weirauch et al.(2014)
pTH7399
0.946
0.868
NAC079
M07228_2.00
Arabidopsis thaliana
CBWNHNNHACACGYWA
TWRCGTGTDNNDNWVG
Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a
0.946
0.868
NAC079
M07229_2.00
Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH
DTWRCKTGWDNNDBAMGNWAN
Dap-seq
OMalley et al.(2016)
ANAC079_col
0.946
0.868
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.946
0.868
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.924
0.825
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.924
0.825
ANAC087
M07232_2.00
Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA
Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a
0.901
0.798
ANAC087
M07233_2.00
Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA
Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a
0.901
0.798
NAC054
M07205_2.00
Arabidopsis thaliana
CKTVHNNHRCACGYHANCW
WGNTDRCGTGYDNNDBAMG
Dap-seq
OMalley et al.(2016)
CUC1_colamp_a
0.900
0.789
NAC054
M07206_2.00
Arabidopsis thaliana
TWNCKTGHNNNDCAMG
CKTGHNNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
CUC1_col_v31
0.900
0.789
e_gw1.159.34.1
M02379_2.00
Physcomitrella patens
DYACGNHANN
NNTDNCGTRH
PBM
Weirauch et al.(2014)
pTH8477
0.889
0.772
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.886
0.737
NAC031
M07182_2.00
Arabidopsis thaliana
NTWDCKTGTNNHWYACGY
RCGTRWDNNACAMGHWAN
Dap-seq
OMalley et al.(2016)
CUC3_col_a
0.879
0.711
NAC031
M07183_2.00
Arabidopsis thaliana
CKTGTNNHDCACGYHA
TDRCGTGHDNNACAMG
Dap-seq
OMalley et al.(2016)
CUC3_colamp_a
0.879
0.711
For this family, TFs with SR scores >
0.870
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00730_2.00
NAC/NAM
21
145
PPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRL
M00979_2.00
NAC/NAM
21
145
PPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G39610.1
NAC/NAM
21
145
PPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis thaliana
TFs
363 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy