CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra028039
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra028039
T292637_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac016
M07172_2.00
Arabidopsis thaliana
DVCKTGNBNNNCAMG
CKTGNNNVNCAMGBH
Dap-seq
OMalley et al.(2016)
ANAC016_col_a
0.945
0.904
anac016
M07173_2.00
Arabidopsis thaliana
TVCKTGNBNNNCAMG
CKTGNNNVNCAMGBA
Dap-seq
OMalley et al.(2016)
ANAC016_colamp_a
0.945
0.904
NAC017
M07174_2.00
Arabidopsis thaliana
NCKTGNBNNNCAMGNWA
TWNCKTGNNNVNCAMGN
Dap-seq
OMalley et al.(2016)
ANAC017_colamp_v31
0.918
0.886
NAC017
M07175_2.00
Arabidopsis thaliana
NDNTTNCTTGBNNNNCAMG
CKTGNNNNVCAAGNAANHN
Dap-seq
OMalley et al.(2016)
ANAC017_col
0.918
0.886
NAC017
M11078_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G34190_Q2
0.918
0.886
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra028039.1-P
NAC/NAM
13
139
APGFRFHPTDEELVMYYLKRKICKTRLRVSAIGVVDVYKLDPEELPGQSVLKSGDRQWFFFTPRNRKYPNAARSGRCTATGYWKATGKDRVIVYDSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
anac016
Arabidopsis thaliana
AT1G34180
D
0.947
anac016
Arabidopsis lyrata
fgenesh2_kg.1__3525__AT1G34180.1
I
0.944
Bo8g027120
Brassica oleracea
Bo8g027120
I
0.937
Bo6g044390
Brassica oleracea
Bo6g044390
I
0.937
Bra036744
Brassica rapa
Bra036744
I
0.937
Cagra.3375s0006
Capsella grandiflora
Cagra.3375s0006
I
0.936
Carubv10008706m.g
Capsella rubella
Carubv10008706m.g
I
0.936
Bostr.1040s0051
Boechera stricta
Bostr.1040s0051
I
0.925
Cagra.3375s0004
Capsella grandiflora
Cagra.3375s0004
I
0.922
anac017
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1003048
I
0.922
Carubv10008761m.g
Capsella rubella
Carubv10008761m.g
I
0.922
NAC017
Arabidopsis thaliana
AT1G34190
D
0.918
Bo5g085440
Brassica oleracea
Bo5g085440
I
0.918
Bra034439
Brassica rapa
Bra034439
I
0.918
Thhalv10007221m.g
Eutrema salsugineum
Thhalv10007221m.g
I
0.915
Thhalv10007196m.g
Eutrema salsugineum
Thhalv10007196m.g
I
0.914
Bostr.1040s0050
Boechera stricta
Bostr.1040s0050
I
0.913
Bra034436
Brassica rapa
Bra034436
I
0.912
cassava19069.valid.m1
Manihot esculenta
cassava19069.valid.m1
I
0.889