CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra031950
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra031950
T292657_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac046
M00884_2.00
Arabidopsis thaliana
NHMCGCMABNN
NNVTKGCGKDN
PBM
Franco-Zorrilla et al.(2014)
ANAC46
0.967
0.947
anac046
M07196_2.00
Arabidopsis thaliana
CKTSHNNHWCAMGYHAH
DTDRCKTGWDNNDSAMG
Dap-seq
OMalley et al.(2016)
ANAC046_colamp_a
0.967
0.947
anac046
M07197_2.00
Arabidopsis thaliana
NNTWNCKTGTNNNDCAMGYHA
TDRCKTGHNNNACAMGNWANN
Dap-seq
OMalley et al.(2016)
ANAC046_col
0.967
0.947
ANAC087
M07232_2.00
Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA
Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a
0.938
0.895
ANAC087
M07233_2.00
Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA
Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a
0.938
0.895
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra031950.1-P
NAC/NAM
21
146
PPGFRFHPTDEEIITHYLKEKVFNVQFTSAAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATLSGYWKATGKDKEIFRGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g148430
Brassica oleracea
Bo5g148430
I
0.971
Thhalv10021125m.g
Eutrema salsugineum
Thhalv10021125m.g
I
0.969
anac046
Arabidopsis lyrata
fgenesh2_kg.3__366__AT3G04060.1
I
0.969
Bostr.2570s0302
Boechera stricta
Bostr.2570s0302
I
0.969
anac046
Arabidopsis thaliana
AT3G04060
D
0.967
Cagra.2026s0002
Capsella grandiflora
Cagra.2026s0002
I
0.965
Carubv10014118m.g
Capsella rubella
Carubv10014118m.g
I
0.965
Bo1g152230
Brassica oleracea
Bo1g152230
I
0.958
Bra040153
Brassica rapa
Bra040153
I
0.956
cassava35698.valid.m1
Manihot esculenta
cassava35698.valid.m1
I
0.939
cassava25877.m1
Manihot esculenta
cassava25877.m1
I
0.939
ANAC087
Arabidopsis thaliana
AT5G18270
D
0.938
ANAC087
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6001462
I
0.938
Cagra.0906s0022
Capsella grandiflora
Cagra.0906s0022
I
0.937
Carubv10001373m.g
Capsella rubella
Carubv10001373m.g
I
0.937
Bostr.26527s0381
Boechera stricta
Bostr.26527s0381
I
0.936
Thhalv10014060m.g
Eutrema salsugineum
Thhalv10014060m.g
I
0.935
29950.m001171
Ricinus communis
29950.m001171
I
0.934
Gorai.007G267700
Gossypium raimondii
Gorai.007G267700
I
0.934
TCM_026028
Theobroma cacao
TCM_026028
I
0.934
Bra023669
Brassica rapa
Bra023669
I
0.934
Bra006449
Brassica rapa
Bra006449
I
0.934
Bo3g013050
Brassica oleracea
Bo3g013050
I
0.934
Bo2g015440
Brassica oleracea
Bo2g015440
I
0.934
Gorai.013G118000
Gossypium raimondii
Gorai.013G118000
I
0.933
Lus10026879.g
Linum usitatissimum
Lus10026879.g
I
0.930
VIT_08s0007g07640
Vitis vinifera
VIT_08s0007g07640
I
0.928
POPTR_0013s05110
Populus trichocarpa
POPTR_0013s05110
I
0.927
Lus10003435.g
Linum usitatissimum
Lus10003435.g
I
0.925
evm.TU.supercontig_594.1
Carica papaya
evm.TU.supercontig_594.1
I
0.921
SapurV1A.0867s0130
Salix purpurea
SapurV1A.0867s0130
I
0.920
SapurV1A.1196s0010
Salix purpurea
SapurV1A.1196s0010
I
0.920
POPTR_0019s04710
Populus trichocarpa
POPTR_0019s04710
I
0.909
GLYMA02G07760
Glycine max
GLYMA02G07760
I
0.906
GLYMA16G26810
Glycine max
GLYMA16G26810
I
0.906
MDP0000184069
Malus domestica
MDP0000184069
I
0.904
SapurV1A.0308s0280
Salix purpurea
SapurV1A.0308s0280
I
0.901
SapurV1A.2283s0010
Salix purpurea
SapurV1A.2283s0010
I
0.901
Ciclev10020549m.g
Citrus clementina
Ciclev10020549m.g
I
0.897
orange1.1g016542m.g
Citrus sinensis
orange1.1g016542m.g
I
0.897
PRUPE_ppa005770mg
Prunus persica
PRUPE_ppa005770mg
I
0.896
Cucsa.002980
Cucumis sativus
Cucsa.002980
I
0.894
GSMUA_Achr5G07600_001
Musa acuminata
GSMUA_Achr5G07600_001
I
0.891
Cla012339
Citrullus lanatus
Cla012339
I
0.890
chr1.CM0104.260.nc
Lotus japonicus
chr1.CM0104.260.nc
I
0.889
Ca_08255
Cicer arietinum
Ca_08255
I
0.888
Pm025307
Prunus mume
Pm025307
I
0.887
GLYMA19G28515
Glycine max
GLYMA19G28515
I
0.887
Aquca_014_00944
Aquilegia coerulea
Aquca_014_00944
I
0.885
Ca_19144
Cicer arietinum
Ca_19144
I
0.884
GLYMA16G04720
Glycine max
GLYMA16G04720
I
0.883
Bra036223
Brassica rapa
Bra036223
I
0.880
gene20686-v1.0-hybrid
Fragaria vesca
gene20686-v1.0-hybrid
I
0.877
GSMUA_Achr6G08600_001
Musa acuminata
GSMUA_Achr6G08600_001
I
0.876
Bo9g175670
Brassica oleracea
Bo9g175670
I
0.872
Bra002148
Brassica rapa
Bra002148
I
0.872
Bo9g157320
Brassica oleracea
Bo9g157320
I
0.872
VIT_17s0000g06400
Vitis vinifera
VIT_17s0000g06400
I
0.871