Bra040153 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra040153 T292705_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac046
M00884_2.00 		Arabidopsis thaliana
NHMCGCMABNN
NNVTKGCGKDN		 PBM
Franco-Zorrilla et al.(2014)
ANAC46 		0.948 0.920
anac046
M07196_2.00 		Arabidopsis thaliana
CKTSHNNHWCAMGYHAH
DTDRCKTGWDNNDSAMG		 Dap-seq
OMalley et al.(2016)
ANAC046_colamp_a 		0.948 0.920
anac046
M07197_2.00 		Arabidopsis thaliana
NNTWNCKTGTNNNDCAMGYHA
TDRCKTGHNNNACAMGNWANN		 Dap-seq
OMalley et al.(2016)
ANAC046_col 		0.948 0.920
ANAC087
M07232_2.00 		Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA		 Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a 		0.905 0.867
ANAC087
M07233_2.00 		Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a 		0.905 0.867
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040153.1-P NAC/NAM 21 145

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g152230 Brassica oleracea Bo1g152230 I 0.967
Bo5g148430 Brassica oleracea Bo5g148430 I 0.956
Bra031950 Brassica rapa Bra031950 I 0.956
Bostr.2570s0302 Boechera stricta Bostr.2570s0302 I 0.952
anac046 Arabidopsis lyrata fgenesh2_kg.3__366__AT3G04060.1 I 0.952
Thhalv10021125m.g Eutrema salsugineum Thhalv10021125m.g I 0.952
anac046 Arabidopsis thaliana AT3G04060 D 0.948
Cagra.2026s0002 Capsella grandiflora Cagra.2026s0002 I 0.946
Carubv10014118m.g Capsella rubella Carubv10014118m.g I 0.946
cassava35698.valid.m1 Manihot esculenta cassava35698.valid.m1 I 0.907
cassava25877.m1 Manihot esculenta cassava25877.m1 I 0.906
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I 0.905
ANAC087 Arabidopsis thaliana AT5G18270 D 0.905
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I 0.903
Carubv10001373m.g Capsella rubella Carubv10001373m.g I 0.903
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I 0.902
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I 0.901
TCM_026028 Theobroma cacao TCM_026028 I 0.900
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I 0.900
Bo3g013050 Brassica oleracea Bo3g013050 I 0.900
Bo2g015440 Brassica oleracea Bo2g015440 I 0.900
Bra023669 Brassica rapa Bra023669 I 0.900
Bra006449 Brassica rapa Bra006449 I 0.900
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I 0.899
29950.m001171 Ricinus communis 29950.m001171 I 0.899
Lus10026879.g Linum usitatissimum Lus10026879.g I 0.893
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I 0.892
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I 0.890
Lus10003435.g Linum usitatissimum Lus10003435.g I 0.887
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I 0.882
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I 0.882
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I 0.881