Bra033300 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra033300 T292667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC004
M07161_2.00 		Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG		 Dap-seq
OMalley et al.(2016)
ANAC004_col_a 		0.971 0.638
NAC004
M07162_2.00 		Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW		 Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a 		0.971 0.638
NAC005
M07163_2.00 		Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW
WWACTTRNDDNRBAAGNWW		 Dap-seq
OMalley et al.(2016)
ANAC005_col_a 		0.948 0.638
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033300.1-P NAC/NAM 4 143

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g002910 Brassica oleracea Bo5g002910 I 0.995
Bra033303 Brassica rapa Bra033303 I 0.987
Bra033308 Brassica rapa Bra033308 I 0.983
NAC004 Arabidopsis thaliana AT1G02230 D 0.971
Bo5g002950 Brassica oleracea Bo5g002950 I 0.969
ANAC004 Arabidopsis lyrata Al_scaffold_0001_137 I 0.968
Bra033306 Brassica rapa Bra033306 I 0.967
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.965
Bostr.8819s0187 Boechera stricta Bostr.8819s0187 I 0.957
NAC005 Arabidopsis thaliana AT1G02250 D 0.948
Bra032615 Brassica rapa Bra032615 I 0.944
anac005 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000123 I 0.944
anac048 Arabidopsis thaliana AT3G04420 I 0.935
anac048 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000114 I 0.930
Bo8g117560 Brassica oleracea Bo8g117560 I 0.912
Bostr.5325s0006 Boechera stricta Bostr.5325s0006 I 0.901
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.881