CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Sb05g001580
(
Sorghum bicolor
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Sb05g001580
T295548_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Traes_5BL_CC18CAD72
M11085_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC691_01
0.946
0.839
NAC029
M00973_2.00
Arabidopsis thaliana
NBACGBMWNN
NNWKVCGTVN
PBM
Lindemose et al.(2014)
NAP
0.871
0.777
NAC029
M02369_2.00
Arabidopsis thaliana
NRGTCAWNN
NNWTGACYN
PBM
Weirauch et al.(2014)
pTH8397
0.871
0.777
NAC029
M07180_2.00
Arabidopsis thaliana
NCGTVHNNNWYACGBMA
TKVCGTRWNNNDBACGN
Dap-seq
OMalley et al.(2016)
NAP_colamp_a
0.871
0.777
NAC029
M07181_2.00
Arabidopsis thaliana
WYACGBMAYYD
HRRTKVCGTRW
Dap-seq
OMalley et al.(2016)
NAP_col_v3a
0.871
0.777
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb05g001580.1
NAC/NAM
30
156
PAGFRFHPTDEELIVHYLMNQAASIPCPVPIIAEVNIYQCNPWDLPAKALFGESEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAIMSTPTGQNIGVKKALVFYGGRPPRGVKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Sorghum bicolor
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb08g001940
Sorghum bicolor
Sb08g001940
I
0.956
Si010410m.g
Setaria italica
Si010410m.g
I
0.953
Si026530m.g
Setaria italica
Si026530m.g
I
0.952
Pavir.J23516
Panicum virgatum
Pavir.J23516
I
0.950
OB12G11500
Oryza brachyantha
OB12G11500
I
0.949
OPUNC12G01370
Oryza punctata
OPUNC12G01370
I
0.948
OB11G11210
Oryza brachyantha
OB11G11210
I
0.948
OPUNC11G01330
Oryza punctata
OPUNC11G01330
I
0.948
Traes_5BL_CC18CAD72
Triticum aestivum
Traes_5BL_CC18CAD72
D
0.946
MLOC_4747
Hordeum vulgare
MLOC_4747
I
0.946
F775_26965
Aegilops tauschii
F775_26965
I
0.946
OS12G0123700
Oryza sativa
OS12G0123700
I
0.942
BGIOSGA036920
Oryza indica
BGIOSGA036920
I
0.942
OLONG_026749
Oryza longistaminata
OLONG_026749
I
0.942
ORGLA12G0011400
Oryza glaberrima
ORGLA12G0011400
I
0.941
OS11G0126900
Oryza sativa
OS11G0126900
I
0.941
OBART11G01590
Oryza barthii
OBART11G01590
I
0.941
OBART12G01290
Oryza barthii
OBART12G01290
I
0.941
OGLUM11G01310
Oryza glumaepatula
OGLUM11G01310
I
0.941
ONIVA11G01630
Oryza nivara
ONIVA11G01630
I
0.941
BGIOSGA034713
Oryza indica
BGIOSGA034713
I
0.941
OGLUM12G01870
Oryza glumaepatula
OGLUM12G01870
I
0.941
BGIOSGA036918
Oryza indica
BGIOSGA036918
I
0.941
OLONG_020632
Oryza longistaminata
OLONG_020632
I
0.940
OMERI12G00480
Oryza meridionalis
OMERI12G00480
I
0.933
GSMUA_Achr6G32320_001
Musa acuminata
GSMUA_Achr6G32320_001
I
0.919
ORUFI12G01570
Oryza rufipogon
ORUFI12G01570
I
0.917
GRMZM2G127379
Zea mays
GRMZM2G127379
I
0.913
GSMUA_AchrUn_randomG17360_001
Musa acuminata
GSMUA_AchrUn_randomG17360_001
I
0.892
NAP
Vitis vinifera
VIT_01s0026g02710
I
0.890
orange1.1g023197m.g
Citrus sinensis
orange1.1g023197m.g
I
0.888
Ciclev10032304m.g
Citrus clementina
Ciclev10032304m.g
I
0.888
mgf022118m
Mimulus guttatus
mgf022118m
I
0.888
Pm006470
Prunus mume
Pm006470
I
0.887
PRUPE_ppa009530mg
Prunus persica
PRUPE_ppa009530mg
I
0.887
LPERR12G01440
Leersia perrieri
LPERR12G01440
I
0.886
MDP0000481448
Malus domestica
MDP0000481448
I
0.886
LPERR11G01300
Leersia perrieri
LPERR11G01300
I
0.886
Lus10036773.g
Linum usitatissimum
Lus10036773.g
I
0.885
Pavir.Ea00837
Panicum virgatum
Pavir.Ea00837
I
0.885
cassava1317.valid.m1
Manihot esculenta
cassava1317.valid.m1
I
0.885
Gorai.008G179900
Gossypium raimondii
Gorai.008G179900
I
0.885
Gorai.005G142300
Gossypium raimondii
Gorai.005G142300
I
0.884
Eucgr.G02486
Eucalyptus grandis
Eucgr.G02486
I
0.884
Lus10037156.g
Linum usitatissimum
Lus10037156.g
I
0.884
29813.m001519
Ricinus communis
29813.m001519
I
0.884
PK25119.1
Cannabis sativa
PK25119.1
I
0.884
Cla010367
Citrullus lanatus
Cla010367
I
0.883
Cucsa.284890
Cucumis sativus
Cucsa.284890
I
0.883
Lus10030446.g
Linum usitatissimum
Lus10030446.g
I
0.883
Lus10026617.g
Linum usitatissimum
Lus10026617.g
I
0.883
GLYMA07G35630
Glycine max
GLYMA07G35630
I
0.882
mgf016382m
Mimulus guttatus
mgf016382m
I
0.882
mgf007362m
Mimulus guttatus
mgf007362m
I
0.882
TCM_011671
Theobroma cacao
TCM_011671
I
0.882
cassava42314.valid.m1
Manihot esculenta
cassava42314.valid.m1
I
0.881
GSMUA_Achr10G12860_001
Musa acuminata
GSMUA_Achr10G12860_001
I
0.881
SapurV1A.0801s0090
Salix purpurea
SapurV1A.0801s0090
I
0.880
POPTR_0008s08850
Populus trichocarpa
POPTR_0008s08850
I
0.878
MTR_2157s0010
Medicago truncatula
MTR_2157s0010
I
0.878
MTR_4g081870
Medicago truncatula
MTR_4g081870
I
0.878
chr2.CM0641.320.nc
Lotus japonicus
chr2.CM0641.320.nc
I
0.878
GRMZM2G109627
Zea mays
GRMZM2G109627
I
0.878
LjSGA_023894.2
Lotus japonicus
LjSGA_023894.2
I
0.877
PGSC0003DMG400002824
Solanum tuberosum
PGSC0003DMG400002824
I
0.877
VIT_08s0040g02110
Vitis vinifera
VIT_08s0040g02110
I
0.877
PGSC0003DMG400018435
Solanum tuberosum
PGSC0003DMG400018435
I
0.875
Pavir.J23256
Panicum virgatum
Pavir.J23256
I
0.875
MDP0000262990
Malus domestica
MDP0000262990
I
0.875
GSMUA_Achr4G02380_001
Musa acuminata
GSMUA_Achr4G02380_001
I
0.875
GLYMA20G04400
Glycine max
GLYMA20G04400
I
0.875
GLYMA02G12220
Glycine max
GLYMA02G12220
I
0.875
chr1.CM0104.240.nc
Lotus japonicus
chr1.CM0104.240.nc
I
0.874
GLYMA01G06150
Glycine max
GLYMA01G06150
I
0.873
Pm025312
Prunus mume
Pm025312
I
0.873
MDP0000180683
Malus domestica
MDP0000180683
I
0.873
Aquca_059_00027
Aquilegia coerulea
Aquca_059_00027
I
0.873
PRUPE_ppa007445mg
Prunus persica
PRUPE_ppa007445mg
I
0.873
GSMUA_Achr6G32330_001
Musa acuminata
GSMUA_Achr6G32330_001
I
0.872
SELMODRAFT_147012
Selaginella moellendorffii
SELMODRAFT_147012
I
0.872
gene30439-v1.0-hybrid
Fragaria vesca
gene30439-v1.0-hybrid
I
0.872
POPTR_0004s03820
Populus trichocarpa
POPTR_0004s03820
I
0.872
SELMODRAFT_108667
Selaginella moellendorffii
SELMODRAFT_108667
I
0.872
NAP
Arabidopsis lyrata
fgenesh2_kg.2__1206__AT1G69490.1
I
0.871
Thhalv10018997m.g
Eutrema salsugineum
Thhalv10018997m.g
I
0.871
NAC029
Arabidopsis thaliana
AT1G69490
D
0.871
Carubv10020776m.g
Capsella rubella
Carubv10020776m.g
I
0.871
Bostr.10273s0418
Boechera stricta
Bostr.10273s0418
I
0.871
Bra004385
Brassica rapa
Bra004385
I
0.871
Cagra.0887s0008
Capsella grandiflora
Cagra.0887s0008
I
0.871
Bo6g108930
Brassica oleracea
Bo6g108930
I
0.871