Carubv10008529m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10008529m.g T297480_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NTL9
M02371_2.00 		Arabidopsis thaliana
ATTACTTAA
TTAAGTAAT		 PBM
Weirauch et al.(2014)
pTH8207 		0.903 0.851
NTL9
M11081_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBNAC_01 		0.903 0.851
NTL9
M11082_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBNAC_02 		0.903 0.851
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008529m NAC/NAM 14 140
Carubv10008531m NAC/NAM 14 140
Carubv10008533m NAC/NAM 14 140

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1443s0001 Capsella grandiflora Cagra.1443s0001 I 0.971
Bostr.3359s0059 Boechera stricta Bostr.3359s0059 I 0.970
NAC014 Arabidopsis thaliana AT1G33060 I 0.967
Thhalv10007021m.g Eutrema salsugineum Thhalv10007021m.g I 0.967
ANAC014 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002639 I 0.967
Bra010193 Brassica rapa Bra010193 I 0.967
Bo5g086780 Brassica oleracea Bo5g086780 I 0.967
PK02019.1 Cannabis sativa PK02019.1 I 0.951
evm.TU.supercontig_37.112 Carica papaya evm.TU.supercontig_37.112 I 0.951
TCM_015584 Theobroma cacao TCM_015584 I 0.948
Gorai.008G261400 Gossypium raimondii Gorai.008G261400 I 0.946
Lus10033251.g Linum usitatissimum Lus10033251.g I 0.945
Lus10008285.g Linum usitatissimum Lus10008285.g I 0.945
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I 0.944
Pm029581 Prunus mume Pm029581 I 0.944
POPTR_0011s15230 Populus trichocarpa POPTR_0011s15230 I 0.943
30068.m002619 Ricinus communis 30068.m002619 I 0.942
VIT_02s0025g03020 Vitis vinifera VIT_02s0025g03020 I 0.942
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I 0.941
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I 0.939
Ciclev10019282m.g Citrus clementina Ciclev10019282m.g I 0.937
MDP0000266908 Malus domestica MDP0000266908 I 0.937
orange1.1g009388m.g Citrus sinensis orange1.1g009388m.g I 0.937
mgf022344m Mimulus guttatus mgf022344m I 0.936
MDP0000658409 Malus domestica MDP0000658409 I 0.929
Lus10010148.g Linum usitatissimum Lus10010148.g I 0.921
gene01851-v1.0-hybrid Fragaria vesca gene01851-v1.0-hybrid I 0.917
Gorai.003G073300 Gossypium raimondii Gorai.003G073300 I 0.915
SapurV1A.0285s0090 Salix purpurea SapurV1A.0285s0090 I 0.914
Cagra.2350s0100 Capsella grandiflora Cagra.2350s0100 I 0.903
NTL9 Arabidopsis thaliana AT4G35580 D 0.903
Bostr.7867s1416 Boechera stricta Bostr.7867s1416 I 0.903
Carubv10007613m.g Capsella rubella Carubv10007613m.g I 0.903
NTL9 Arabidopsis lyrata fgenesh2_kg.7__521__AT4G35580.1 I 0.903
Aquca_020_00035 Aquilegia coerulea Aquca_020_00035 I 0.893
SapurV1A.0666s0060 Salix purpurea SapurV1A.0666s0060 N 0.892
VIT_16s0098g00760 Vitis vinifera VIT_16s0098g00760 I 0.885
Aquca_020_00034 Aquilegia coerulea Aquca_020_00034 I 0.882