CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ca02638
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Ca02638
T298792_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ca02638.1.p
NAC/NAM
28
159
FPGFRFHPTDQELLSFYLTRKVQKKGFSIDTIKEVDIYKHDPWDLPNEARHVVQGAGDKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHGGAGGECLGLKKSLVYYRGSAGRGTKTDWMMREFRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J31204
Panicum virgatum
Pavir.J31204
I
0.954
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.937
BRADI1G58057
Brachypodium distachyon
BRADI1G58057
I
0.934
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.933
LPERR12G16500
Leersia perrieri
LPERR12G16500
N
0.922
OMERI12G14510
Oryza meridionalis
OMERI12G14510
I
0.922
OGLUM12G21360
Oryza glumaepatula
OGLUM12G21360
I
0.921
ORUFI12G21970
Oryza rufipogon
ORUFI12G21970
I
0.921
OBART12G19610
Oryza barthii
OBART12G19610
I
0.921
ORGLA12G0169600
Oryza glaberrima
ORGLA12G0169600
I
0.921
ONIVA12G18630
Oryza nivara
ONIVA12G18630
I
0.921
Pavir.Ba02443
Panicum virgatum
Pavir.Ba02443
I
0.919
OPUNC12G17870
Oryza punctata
OPUNC12G17870
I
0.918
Si022714m.g
Setaria italica
Si022714m.g
I
0.911
OB12G26370
Oryza brachyantha
OB12G26370
N
0.900
BGIOSGA035784
Oryza indica
BGIOSGA035784
N
0.899
Pavir.J03639
Panicum virgatum
Pavir.J03639
I
0.899
Pavir.J26531
Panicum virgatum
Pavir.J26531
I
0.899
Lus10031767.g
Linum usitatissimum
Lus10031767.g
I
0.893
Lus10031189.g
Linum usitatissimum
Lus10031189.g
I
0.893
OS03G0777000
Oryza sativa
OS03G0777000
I
0.892
ORUFI03G37500
Oryza rufipogon
ORUFI03G37500
I
0.892
ONIVA10G12510
Oryza nivara
ONIVA10G12510
I
0.892
BGIOSGA013656
Oryza indica
BGIOSGA013656
I
0.892
Si036447m.g
Setaria italica
Si036447m.g
I
0.885
OGLUM03G35790
Oryza glumaepatula
OGLUM03G35790
I
0.884
ORGLA03G0330500
Oryza glaberrima
ORGLA03G0330500
I
0.883
OMERI03G33230
Oryza meridionalis
OMERI03G33230
I
0.883
OBART03G36060
Oryza barthii
OBART03G36060
I
0.883
OPUNC03G33030
Oryza punctata
OPUNC03G33030
I
0.882
Sb01g006410
Sorghum bicolor
Sb01g006410
I
0.880
OB03G42970
Oryza brachyantha
OB03G42970
I
0.878
GSMUA_Achr5G02170_001
Musa acuminata
GSMUA_Achr5G02170_001
I
0.876
GRMZM2G475014
Zea mays
GRMZM2G475014
I
0.876
Traes_5BL_3900B9128
Triticum aestivum
Traes_5BL_3900B9128
I
0.873
F775_15555
Aegilops tauschii
F775_15555
N
0.871
LPERR03G30390
Leersia perrieri
LPERR03G30390
I
0.871
BRADI1G06970
Brachypodium distachyon
BRADI1G06970
I
0.871
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.870