CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J31204
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.J31204
T299003_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.956
0.675
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.913
0.544
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.913
0.544
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.913
0.544
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.896
0.526
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J31204.1.p
NAC/NAM
28
159
FPGFRFHPTNQELLSFYLTRKVQKKGFSIDIIKEVDIYKHDPWDLPNEARHVVQGAGDKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHGGAGGECLGLKKSLVYYRGSAGRGTKTDWMMREFRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
181 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.992
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.991
Si022714m.g
Setaria italica
Si022714m.g
I
0.988
Pavir.Ba02443
Panicum virgatum
Pavir.Ba02443
I
0.986
GRMZM2G475014
Zea mays
GRMZM2G475014
I
0.982
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.978
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.977
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.972
Cla023594
Citrullus lanatus
Cla023594
I
0.966
TCM_029321
Theobroma cacao
TCM_029321
I
0.963
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.961
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.961
Bra039353
Brassica rapa
Bra039353
I
0.957
Bo1g138800
Brassica oleracea
Bo1g138800
I
0.957
VIT_19s0027g00840
Vitis vinifera
VIT_19s0027g00840
I
0.957
AT3G12910
Arabidopsis thaliana
AT3G12910
D
0.956
Thhalv10021225m.g
Eutrema salsugineum
Thhalv10021225m.g
I
0.956
fgenesh2_kg.3__1353__AT3G12910.1
Arabidopsis lyrata
fgenesh2_kg.3__1353__AT3G12910.1
I
0.956
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
0.956
POPTR_0003s14950
Populus trichocarpa
POPTR_0003s14950
I
0.955
SapurV1A.0059s0580
Salix purpurea
SapurV1A.0059s0580
I
0.955
Pavir.Ca02638
Panicum virgatum
Pavir.Ca02638
N
0.954
Bostr.3640s0064
Boechera stricta
Bostr.3640s0064
I
0.952
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.952
Bo5g133050
Brassica oleracea
Bo5g133050
I
0.951
Gorai.010G236700
Gossypium raimondii
Gorai.010G236700
I
0.951
Carubv10014270m.g
Capsella rubella
Carubv10014270m.g
I
0.950
Si022723m.g
Setaria italica
Si022723m.g
I
0.950
Cagra.5641s0055
Capsella grandiflora
Cagra.5641s0055
I
0.950
Bra034719
Brassica rapa
Bra034719
I
0.947
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.946
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.946
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.943
Si036303m.g
Setaria italica
Si036303m.g
I
0.941
MTR_2g068880
Medicago truncatula
MTR_2g068880
I
0.940
Bo3g065200
Brassica oleracea
Bo3g065200
I
0.938
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.938
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.936
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.936
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.935
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.934
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.933
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.931
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.928
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.928
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.925
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.925
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.924
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.923
cassava39074.m1
Manihot esculenta
cassava39074.m1
I
0.923
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.922
Cucsa.058780
Cucumis sativus
Cucsa.058780
I
0.922
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.921
mgf013201m
Mimulus guttatus
mgf013201m
I
0.919
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.916
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.916
TCM_035160
Theobroma cacao
TCM_035160
I
0.916
PK26157.1
Cannabis sativa
PK26157.1
I
0.916
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.915
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.915
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.913
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.913
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.913
Bra033239
Brassica rapa
Bra033239
I
0.913
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.913
NAC002
Arabidopsis thaliana
AT1G01720
D
0.913
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.913
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.913
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.912
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.912
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.911
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.911
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.911
OS04G0691300
Oryza sativa
OS04G0691300
I
0.911
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.911
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.911
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.911
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.911
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.911
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.910
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.910
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.910
OB09G25590
Oryza brachyantha
OB09G25590
I
0.910
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.910
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.910
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.910
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.910
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.910
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.910
F775_13961
Aegilops tauschii
F775_13961
I
0.910
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.910
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.910
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.910
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.909
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.908
Si032702m.g
Setaria italica
Si032702m.g
I
0.908
Ca_13571
Cicer arietinum
Ca_13571
I
0.908
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.908
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.907
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.907
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.906
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.905
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.905
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.905
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.905
SapurV1A.0958s0170
Salix purpurea
SapurV1A.0958s0170
I
0.902
MLOC_65286
Hordeum vulgare
MLOC_65286
I
0.901
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.900
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.900
OB05G24820
Oryza brachyantha
OB05G24820
I
0.899
BRADI1G58057
Brachypodium distachyon
BRADI1G58057
I
0.899
SapurV1A.0311s0230
Salix purpurea
SapurV1A.0311s0230
I
0.896
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.896
POPTR_0005s07060
Populus trichocarpa
POPTR_0005s07060
I
0.896
NAC48
Oryza sativa
OS01G0884300
D
0.896
OBART01G39590
Oryza barthii
OBART01G39590
I
0.896
OB01G48340
Oryza brachyantha
OB01G48340
I
0.896
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.896
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.896
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.896
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.896
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.896
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.896
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.896
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.896
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.896
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.896
GSMUA_Achr7G23250_001
Musa acuminata
GSMUA_Achr7G23250_001
I
0.896
F775_28813
Aegilops tauschii
F775_28813
I
0.896
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.896
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.895
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.895
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.895
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.895
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.895
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.895
Si002413m.g
Setaria italica
Si002413m.g
I
0.895
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.895
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.893
SapurV1A.2021s0010
Salix purpurea
SapurV1A.2021s0010
I
0.892
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.891
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.891
F775_20638
Aegilops tauschii
F775_20638
I
0.891
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.890
LPERR07G06440
Leersia perrieri
LPERR07G06440
I
0.890
POPTR_0007s04780
Populus trichocarpa
POPTR_0007s04780
I
0.889
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.888
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.886
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.886
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.886
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.886
POPTR_0005s10610
Populus trichocarpa
POPTR_0005s10610
I
0.885
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.884
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.884
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.883
AMTR_s00017p00255350
Amborella trichopoda
AMTR_s00017p00255350
I
0.883
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.883
OS05G0415400
Oryza sativa
OS05G0415400
I
0.882
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.882
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.882
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.882
OBART05G16540
Oryza barthii
OBART05G16540
I
0.882
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.882
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.882
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.882
F775_23543
Aegilops tauschii
F775_23543
I
0.881
mgf004020m
Mimulus guttatus
mgf004020m
I
0.881
TRAES3BF100600040CFD_g
Triticum aestivum
TRAES3BF100600040CFD_g
I
0.881
Si030752m.g
Setaria italica
Si030752m.g
I
0.880
SapurV1A.0039s0530
Salix purpurea
SapurV1A.0039s0530
I
0.880
Si010053m.g
Setaria italica
Si010053m.g
N
0.879
cassava23439.valid.m1
Manihot esculenta
cassava23439.valid.m1
I
0.878
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.877
LPERR12G16500
Leersia perrieri
LPERR12G16500
N
0.875
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.875
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.874
NAC026
Arabidopsis thaliana
AT1G62700
I
0.874
mgf015836m
Mimulus guttatus
mgf015836m
I
0.873
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.872
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.871
mgf002183m
Mimulus guttatus
mgf002183m
I
0.871