CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_029321
(
Theobroma cacao
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
TCM_029321
T295973_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.965
0.717
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.922
0.566
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.922
0.566
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.922
0.566
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.910
0.540
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.890
0.531
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.890
0.531
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY27482
NAC/NAM
20
150
LPGFRFHPTDQELVGFYLKRKVEKKLFSIDLIKHVDIYKYDPWDLPKVSKLSTVTEKELYFFCRRGRKYRNSIRPNRVTSSGFWKATGIDKPIYSVGEFHGCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Theobroma cacao
TFs
203 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.010G236700
Gossypium raimondii
Gorai.010G236700
I
0.994
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.992
POPTR_0003s14950
Populus trichocarpa
POPTR_0003s14950
I
0.990
SapurV1A.0059s0580
Salix purpurea
SapurV1A.0059s0580
I
0.990
Bo3g065200
Brassica oleracea
Bo3g065200
I
0.985
VIT_19s0027g00840
Vitis vinifera
VIT_19s0027g00840
I
0.978
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.977
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.977
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.975
Si022714m.g
Setaria italica
Si022714m.g
I
0.975
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.974
Cla023594
Citrullus lanatus
Cla023594
I
0.973
Bra034719
Brassica rapa
Bra034719
I
0.973
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.973
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.972
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
0.971
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.971
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.971
Bra039353
Brassica rapa
Bra039353
I
0.966
Bo1g138800
Brassica oleracea
Bo1g138800
I
0.966
Cagra.5641s0055
Capsella grandiflora
Cagra.5641s0055
I
0.966
Carubv10014270m.g
Capsella rubella
Carubv10014270m.g
I
0.966
Thhalv10021225m.g
Eutrema salsugineum
Thhalv10021225m.g
I
0.965
AT3G12910
Arabidopsis thaliana
AT3G12910
D
0.965
fgenesh2_kg.3__1353__AT3G12910.1
Arabidopsis lyrata
fgenesh2_kg.3__1353__AT3G12910.1
I
0.965
Bostr.3640s0064
Boechera stricta
Bostr.3640s0064
I
0.965
Pavir.J31204
Panicum virgatum
Pavir.J31204
I
0.963
cassava39074.m1
Manihot esculenta
cassava39074.m1
I
0.962
Bo5g133050
Brassica oleracea
Bo5g133050
I
0.960
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.960
Pavir.Ba02443
Panicum virgatum
Pavir.Ba02443
I
0.958
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.958
MTR_2g068880
Medicago truncatula
MTR_2g068880
I
0.958
GRMZM2G475014
Zea mays
GRMZM2G475014
I
0.953
Ca_13571
Cicer arietinum
Ca_13571
I
0.946
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.938
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.936
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.936
Cucsa.058780
Cucumis sativus
Cucsa.058780
I
0.936
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.933
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.933
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.931
MDP0000216714
Malus domestica
MDP0000216714
I
0.931
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.930
PK26157.1
Cannabis sativa
PK26157.1
I
0.926
TCM_035160
Theobroma cacao
TCM_035160
I
0.925
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.925
SapurV1A.0958s0170
Salix purpurea
SapurV1A.0958s0170
I
0.925
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.924
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.923
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.923
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.923
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.923
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.922
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.922
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.922
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.922
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.922
Bra033239
Brassica rapa
Bra033239
I
0.922
NAC002
Arabidopsis thaliana
AT1G01720
D
0.922
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.921
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.920
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.920
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.920
Si036303m.g
Setaria italica
Si036303m.g
I
0.919
mgf013201m
Mimulus guttatus
mgf013201m
I
0.919
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.919
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.918
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.918
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.918
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.916
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.916
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.916
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.915
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.913
F775_28813
Aegilops tauschii
F775_28813
I
0.913
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.913
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.913
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.913
POPTR_0001s11660
Populus trichocarpa
POPTR_0001s11660
I
0.913
OB05G24820
Oryza brachyantha
OB05G24820
I
0.913
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.910
SapurV1A.0094s0540
Salix purpurea
SapurV1A.0094s0540
I
0.910
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.910
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.910
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.910
OB01G48340
Oryza brachyantha
OB01G48340
I
0.910
OBART01G39590
Oryza barthii
OBART01G39590
I
0.910
mgf004020m
Mimulus guttatus
mgf004020m
I
0.910
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.910
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.910
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.910
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.910
NAC48
Oryza sativa
OS01G0884300
D
0.910
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.909
SapurV1A.0311s0230
Salix purpurea
SapurV1A.0311s0230
I
0.909
Si022723m.g
Setaria italica
Si022723m.g
I
0.909
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.909
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.909
Gorai.011G239800
Gossypium raimondii
Gorai.011G239800
N
0.909
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.909
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.909
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.909
POPTR_0005s07060
Populus trichocarpa
POPTR_0005s07060
I
0.909
Si002413m.g
Setaria italica
Si002413m.g
I
0.908
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.908
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.905
POPTR_0005s10610
Populus trichocarpa
POPTR_0005s10610
I
0.905
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.905
Cla011742
Citrullus lanatus
Cla011742
I
0.904
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.904
cassava23439.valid.m1
Manihot esculenta
cassava23439.valid.m1
I
0.904
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.903
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.903
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.903
NAC026
Arabidopsis thaliana
AT1G62700
I
0.903
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.903
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.902
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.902
SapurV1A.2021s0010
Salix purpurea
SapurV1A.2021s0010
I
0.902
POPTR_0007s04780
Populus trichocarpa
POPTR_0007s04780
I
0.902
OS05G0415400
Oryza sativa
OS05G0415400
I
0.901
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.901
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.901
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.901
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.901
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.901
OBART05G16540
Oryza barthii
OBART05G16540
I
0.901
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.901
mgf002365m
Mimulus guttatus
mgf002365m
I
0.900
Eucgr.A02028
Eucalyptus grandis
Eucgr.A02028
N
0.897
Lus10030478.g
Linum usitatissimum
Lus10030478.g
I
0.895
PRUPE_ppa019007mg
Prunus persica
PRUPE_ppa019007mg
I
0.894
Cagra.4003s0027
Capsella grandiflora
Cagra.4003s0027
I
0.892
Bra029266
Brassica rapa
Bra029266
I
0.892
Thhalv10004488m.g
Eutrema salsugineum
Thhalv10004488m.g
I
0.892
Bo3g107700
Brassica oleracea
Bo3g107700
I
0.892
Bra010077
Brassica rapa
Bra010077
I
0.892
Carubv10026697m.g
Capsella rubella
Carubv10026697m.g
I
0.892
SapurV1A.0039s0530
Salix purpurea
SapurV1A.0039s0530
I
0.892
Bo2g164090
Brassica oleracea
Bo2g164090
I
0.892
GSMUA_Achr7G23250_001
Musa acuminata
GSMUA_Achr7G23250_001
I
0.892
OS04G0691300
Oryza sativa
OS04G0691300
I
0.891
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.891
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.891
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.891
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.891
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.891
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.891
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.891
BRADI3G13630
Brachypodium distachyon
BRADI3G13630
N
0.890
VND6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001814
I
0.890
NAC101
Arabidopsis thaliana
AT5G62380
D
0.890
Bostr.0568s0569
Boechera stricta
Bostr.0568s0569
I
0.890
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.890
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.890
F775_20638
Aegilops tauschii
F775_20638
I
0.889
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.889
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.888
LPERR07G06440
Leersia perrieri
LPERR07G06440
I
0.888
AMTR_s00032p00126420
Amborella trichopoda
AMTR_s00032p00126420
I
0.888
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.886
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.886
Traes_7BL_8A5D12EE1
Triticum aestivum
Traes_7BL_8A5D12EE1
I
0.886
cassava4505.m1
Manihot esculenta
cassava4505.m1
I
0.886
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.885
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.884
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.884
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.884
F775_13961
Aegilops tauschii
F775_13961
I
0.884
Si030752m.g
Setaria italica
Si030752m.g
I
0.884
mgf002183m
Mimulus guttatus
mgf002183m
I
0.884
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.884
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.883
F775_11764
Aegilops tauschii
F775_11764
I
0.882
Traes_7DL_D05DA373C
Triticum aestivum
Traes_7DL_D05DA373C
I
0.882
TRIUR3_29260
Triticum urartu
TRIUR3_29260
I
0.882
MLOC_37364
Hordeum vulgare
MLOC_37364
I
0.882
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.882
SapurV1A.2065s0010
Salix purpurea
SapurV1A.2065s0010
I
0.881
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.881
SapurV1A.2645s0010
Salix purpurea
SapurV1A.2645s0010
I
0.881
Bra035896
Brassica rapa
Bra035896
I
0.881
OB09G25590
Oryza brachyantha
OB09G25590
I
0.881
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.881
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.881
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.881
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.881
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.881
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.881
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.880
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.880
Si032702m.g
Setaria italica
Si032702m.g
I
0.880
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.877
F775_00272
Aegilops tauschii
F775_00272
I
0.876
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.875
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.875
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.872
TCM_029796
Theobroma cacao
TCM_029796
I
0.871
Lus10005204.g
Linum usitatissimum
Lus10005204.g
N
0.871
PGSC0003DMG400001223
Solanum tuberosum
PGSC0003DMG400001223
N
0.871
AMTR_s00017p00255350
Amborella trichopoda
AMTR_s00017p00255350
I
0.871
Lus10013316.g
Linum usitatissimum
Lus10013316.g
N
0.871