CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_029796
(
Theobroma cacao
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
TCM_029796
T295974_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.949
0.617
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.949
0.617
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.949
0.617
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.939
0.600
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.892
0.496
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.875
0.539
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.875
0.539
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY28148
NAC/NAM
17
144
PPGFRFHPTDEELIIHYLKQKASPSSNPPILIIADVNIYKFNPWELPDKAFFGENEWFFFSPRDKKYPNGTRPNRAAASGYWKATGTDKPIISSVGSQCLGMKKALVFYKGHPPKGVKTDWMMTEYML
Links
Other
NAC/NAM
family TFs
Other
Theobroma cacao
TFs
227 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.986
cassava4505.m1
Manihot esculenta
cassava4505.m1
I
0.984
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.984
mgf004020m
Mimulus guttatus
mgf004020m
I
0.966
Si036303m.g
Setaria italica
Si036303m.g
I
0.963
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.963
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.962
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.961
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.961
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.960
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.960
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.959
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.959
OBART05G16540
Oryza barthii
OBART05G16540
I
0.959
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.959
Si004195m.g
Setaria italica
Si004195m.g
I
0.959
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.959
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.959
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.959
OS05G0415400
Oryza sativa
OS05G0415400
I
0.959
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.958
Pavir.Ea00010
Panicum virgatum
Pavir.Ea00010
I
0.956
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.955
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.955
Sb03g000330
Sorghum bicolor
Sb03g000330
I
0.954
TCM_035160
Theobroma cacao
TCM_035160
I
0.953
Sb08g014060
Sorghum bicolor
Sb08g014060
I
0.953
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.953
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.952
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.952
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.951
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.951
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.951
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.951
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.950
TRAES3BF100600040CFD_g
Triticum aestivum
TRAES3BF100600040CFD_g
I
0.950
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.950
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.950
F775_23543
Aegilops tauschii
F775_23543
I
0.950
PK26157.1
Cannabis sativa
PK26157.1
I
0.949
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.949
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.949
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.949
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.949
Bra033239
Brassica rapa
Bra033239
I
0.949
NAC002
Arabidopsis thaliana
AT1G01720
D
0.949
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.949
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.948
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.948
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.948
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.948
GRMZM2G083347
Zea mays
GRMZM2G083347
I
0.948
Si030752m.g
Setaria italica
Si030752m.g
I
0.948
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.947
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.945
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.945
LPERR07G06440
Leersia perrieri
LPERR07G06440
I
0.944
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.944
mgf013201m
Mimulus guttatus
mgf013201m
I
0.943
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.940
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.940
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.940
OBART01G39590
Oryza barthii
OBART01G39590
I
0.939
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.939
OB01G48340
Oryza brachyantha
OB01G48340
I
0.939
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.939
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.939
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.939
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.939
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.939
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.939
NAC48
Oryza sativa
OS01G0884300
D
0.939
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.939
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.939
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.939
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.939
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.938
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.938
Si002413m.g
Setaria italica
Si002413m.g
I
0.938
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.938
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.938
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.938
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.938
cassava39074.m1
Manihot esculenta
cassava39074.m1
I
0.937
OB05G24820
Oryza brachyantha
OB05G24820
I
0.937
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.936
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.936
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.936
F775_28813
Aegilops tauschii
F775_28813
I
0.936
ORUFI10G07040
Oryza rufipogon
ORUFI10G07040
I
0.934
BGIOSGA037382
Oryza indica
BGIOSGA037382
I
0.934
SapurV1A.0311s0230
Salix purpurea
SapurV1A.0311s0230
I
0.934
OS12G0477400
Oryza sativa
OS12G0477400
I
0.934
POPTR_0005s07060
Populus trichocarpa
POPTR_0005s07060
I
0.934
OMERI12G08420
Oryza meridionalis
OMERI12G08420
I
0.934
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.934
ONIVA12G11920
Oryza nivara
ONIVA12G11920
I
0.934
LPERR05G13140
Leersia perrieri
LPERR05G13140
I
0.934
OGLUM12G13410
Oryza glumaepatula
OGLUM12G13410
I
0.934
OPUNC12G10470
Oryza punctata
OPUNC12G10470
I
0.933
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.932
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.932
Lus10015389.g
Linum usitatissimum
Lus10015389.g
I
0.931
BRADI4G07527
Brachypodium distachyon
BRADI4G07527
I
0.930
Si022924m.g
Setaria italica
Si022924m.g
I
0.929
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.929
Pavir.Cb00769
Panicum virgatum
Pavir.Cb00769
I
0.929
POPTR_0007s04780
Populus trichocarpa
POPTR_0007s04780
I
0.929
LPERR12G01440
Leersia perrieri
LPERR12G01440
I
0.929
LPERR01G08530
Leersia perrieri
LPERR01G08530
N
0.929
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.927
LPERR11G01300
Leersia perrieri
LPERR11G01300
I
0.927
Pavir.Ca02208
Panicum virgatum
Pavir.Ca02208
I
0.924
mgf002183m
Mimulus guttatus
mgf002183m
I
0.923
SapurV1A.2021s0010
Salix purpurea
SapurV1A.2021s0010
I
0.922
Si022714m.g
Setaria italica
Si022714m.g
I
0.919
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.917
LPERR12G09780
Leersia perrieri
LPERR12G09780
I
0.915
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.914
GRMZM2G063522
Zea mays
GRMZM2G063522
I
0.913
VIT_19s0027g00840
Vitis vinifera
VIT_19s0027g00840
I
0.912
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.912
AMTR_s00017p00255350
Amborella trichopoda
AMTR_s00017p00255350
I
0.912
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.911
SapurV1A.0039s0530
Salix purpurea
SapurV1A.0039s0530
I
0.911
Pavir.J04049
Panicum virgatum
Pavir.J04049
I
0.909
Pavir.J36955
Panicum virgatum
Pavir.J36955
I
0.909
GSMUA_Achr7G23250_001
Musa acuminata
GSMUA_Achr7G23250_001
I
0.909
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.908
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.907
POPTR_0003s14950
Populus trichocarpa
POPTR_0003s14950
I
0.905
SapurV1A.0059s0580
Salix purpurea
SapurV1A.0059s0580
I
0.904
POPTR_0011s05760
Populus trichocarpa
POPTR_0011s05760
N
0.904
SapurV1A.0344s0360
Salix purpurea
SapurV1A.0344s0360
I
0.904
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
0.903
Cla023594
Citrullus lanatus
Cla023594
I
0.903
Gorai.010G236700
Gossypium raimondii
Gorai.010G236700
I
0.903
Carubv10001357m.g
Capsella rubella
Carubv10001357m.g
N
0.901
Bostr.26527s0049
Boechera stricta
Bostr.26527s0049
N
0.901
Cagra.0846s0004
Capsella grandiflora
Cagra.0846s0004
N
0.901
anac089
Arabidopsis lyrata
scaffold_602275.1
N
0.901
Cla011742
Citrullus lanatus
Cla011742
I
0.901
NAC089
Arabidopsis thaliana
AT5G22290
N
0.900
Bra034719
Brassica rapa
Bra034719
I
0.900
Aquca_016_00364
Aquilegia coerulea
Aquca_016_00364
N
0.900
SELMODRAFT_71305
Selaginella moellendorffii
SELMODRAFT_71305
I
0.900
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.899
Thhalv10012308m.g
Eutrema salsugineum
Thhalv10012308m.g
I
0.899
NAC026
Arabidopsis thaliana
AT1G62700
I
0.898
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.898
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.898
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.897
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.896
Cagra.5641s0055
Capsella grandiflora
Cagra.5641s0055
I
0.893
Carubv10014270m.g
Capsella rubella
Carubv10014270m.g
I
0.893
SapurV1A.0869s0210
Salix purpurea
SapurV1A.0869s0210
I
0.893
AT3G12910
Arabidopsis thaliana
AT3G12910
D
0.892
Bra039353
Brassica rapa
Bra039353
I
0.891
Thhalv10021225m.g
Eutrema salsugineum
Thhalv10021225m.g
I
0.891
fgenesh2_kg.3__1353__AT3G12910.1
Arabidopsis lyrata
fgenesh2_kg.3__1353__AT3G12910.1
I
0.891
mgf019285m
Mimulus guttatus
mgf019285m
I
0.891
Bo1g138800
Brassica oleracea
Bo1g138800
I
0.891
SELMODRAFT_69090
Selaginella moellendorffii
SELMODRAFT_69090
I
0.890
Si022723m.g
Setaria italica
Si022723m.g
I
0.890
Bostr.3640s0064
Boechera stricta
Bostr.3640s0064
I
0.889
Bo1g128420
Brassica oleracea
Bo1g128420
I
0.889
BGIOSGA022116
Oryza indica
BGIOSGA022116
N
0.889
MDP0000674514
Malus domestica
MDP0000674514
I
0.889
OGLUM06G00040
Oryza glumaepatula
OGLUM06G00040
N
0.889
OBART06G00060
Oryza barthii
OBART06G00060
N
0.889
ONIVA06G00080
Oryza nivara
ONIVA06G00080
N
0.889
OLONG_004904
Oryza longistaminata
OLONG_004904
N
0.889
Bra018997
Brassica rapa
Bra018997
I
0.889
Bra021114
Brassica rapa
Bra021114
I
0.889
ORGLA06G0000500
Oryza glaberrima
ORGLA06G0000500
N
0.889
OS06G0101800
Oryza sativa
OS06G0101800
N
0.889
ORUFI06G00070
Oryza rufipogon
ORUFI06G00070
N
0.889
ORUFI05G18190
Oryza rufipogon
ORUFI05G18190
I
0.889
Bo6g030920
Brassica oleracea
Bo6g030920
I
0.889
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.889
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
0.888
Ca_00111
Cicer arietinum
Ca_00111
I
0.887
anac025
Vitis vinifera
VIT_00s0375g00040
I
0.887
BRADI1G52480
Brachypodium distachyon
BRADI1G52480
N
0.887
OPUNC06G00030
Oryza punctata
OPUNC06G00030
N
0.887
MLOC_75297
Hordeum vulgare
MLOC_75297
N
0.886
Traes_4AL_22CE41C6F
Triticum aestivum
Traes_4AL_22CE41C6F
N
0.886
evm.TU.contig_33298
Carica papaya
evm.TU.contig_33298
I
0.886
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
0.885
BRADI1G32660
Brachypodium distachyon
BRADI1G32660
I
0.885
GRMZM2G139700
Zea mays
GRMZM2G139700
I
0.883
PGSC0003DMG400005892
Solanum tuberosum
PGSC0003DMG400005892
I
0.880
SELMODRAFT_71307
Selaginella moellendorffii
SELMODRAFT_71307
I
0.880
SELMODRAFT_86855
Selaginella moellendorffii
SELMODRAFT_86855
I
0.880
Eucgr.J00940
Eucalyptus grandis
Eucgr.J00940
N
0.879
Bo3g065200
Brassica oleracea
Bo3g065200
I
0.879
mgf002365m
Mimulus guttatus
mgf002365m
I
0.878
OMERI06G00050
Oryza meridionalis
OMERI06G00050
N
0.878
MTR_1g008740
Medicago truncatula
MTR_1g008740
I
0.878
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.877
OB03G25680
Oryza brachyantha
OB03G25680
I
0.877
Gorai.011G030600
Gossypium raimondii
Gorai.011G030600
N
0.876
GLYMA07G31220
Glycine max
GLYMA07G31220
I
0.876
Pavir.Ba02443
Panicum virgatum
Pavir.Ba02443
I
0.876
Bra029266
Brassica rapa
Bra029266
I
0.876
Thhalv10004488m.g
Eutrema salsugineum
Thhalv10004488m.g
I
0.876
Bra010077
Brassica rapa
Bra010077
I
0.876
Bo2g164090
Brassica oleracea
Bo2g164090
I
0.876
Bo3g107700
Brassica oleracea
Bo3g107700
I
0.876
NAC101
Arabidopsis thaliana
AT5G62380
D
0.875
VND6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001814
I
0.875
Bostr.0568s0569
Boechera stricta
Bostr.0568s0569
I
0.875
Carubv10026697m.g
Capsella rubella
Carubv10026697m.g
I
0.875
Cagra.4003s0027
Capsella grandiflora
Cagra.4003s0027
I
0.875
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.874
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.873
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.873
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.873
F775_30297
Aegilops tauschii
F775_30297
I
0.873
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.872
AMTR_s00007p00063550
Amborella trichopoda
AMTR_s00007p00063550
N
0.872
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.872
F775_20638
Aegilops tauschii
F775_20638
I
0.872
MLOC_65286
Hordeum vulgare
MLOC_65286
I
0.872
LPERR03G13950
Leersia perrieri
LPERR03G13950
I
0.871
TCM_029321
Theobroma cacao
TCM_029321
I
0.871
Pavir.Ga00022
Panicum virgatum
Pavir.Ga00022
I
0.871