CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Da00789
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Da00789
T298803_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Da00789.1.p
NAC/NAM
54
210
PAGVKFDPTDQELIEHLQAKVRPGSTAAPSHPLIDEFIPTIEGEDGICYTHPEKLPGLTKDGLSRHFFHRPSKAYTTGTRKRRKIQPPAADASSSSSAPAAQQQQRSETRWHKTGKTRPVVVAGRQRGCKKILVLYTNFGKHRRPEKTNWVMHQYHL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si006435m.g
Setaria italica
Si006435m.g
N
0.998
GRMZM2G115721
Zea mays
GRMZM2G115721
N
0.997
Pavir.Db01277
Panicum virgatum
Pavir.Db01277
N
0.997
Sb10g022130
Sorghum bicolor
Sb10g022130
N
0.996
MLOC_72553
Hordeum vulgare
MLOC_72553
N
0.996
Lus10034999.g
Linum usitatissimum
Lus10034999.g
N
0.994
mgf019352m
Mimulus guttatus
mgf019352m
N
0.994
Lus10012927.g
Linum usitatissimum
Lus10012927.g
N
0.994
Bra002802
Brassica rapa
Bra002802
N
0.992
Bo9g126190
Brassica oleracea
Bo9g126190
N
0.992
Traes_7DL_1913741A8
Triticum aestivum
Traes_7DL_1913741A8
N
0.991
Cucsa.087480
Cucumis sativus
Cucsa.087480
N
0.988
Cla000384
Citrullus lanatus
Cla000384
N
0.988
Traes_7AL_EFD897AFC
Triticum aestivum
Traes_7AL_EFD897AFC
N
0.986
Sb03g031000
Sorghum bicolor
Sb03g031000
N
0.940
GRMZM2G179049
Zea mays
GRMZM2G179049
N
0.912
Pavir.J11699
Panicum virgatum
Pavir.J11699
N
0.909
Pavir.J23083
Panicum virgatum
Pavir.J23083
N
0.909
GRMZM2G054277
Zea mays
GRMZM2G054277
N
0.905
BRADI4G34800
Brachypodium distachyon
BRADI4G34800
N
0.902
Si030942m.g
Setaria italica
Si030942m.g
N
0.895
OB06G26080
Oryza brachyantha
OB06G26080
N
0.895
LPERR09G12100
Leersia perrieri
LPERR09G12100
N
0.893
ORGLA09G0123200
Oryza glaberrima
ORGLA09G0123200
N
0.886
OBART09G15890
Oryza barthii
OBART09G15890
N
0.886
OGLUM09G16460
Oryza glumaepatula
OGLUM09G16460
N
0.886
OMERI09G11810
Oryza meridionalis
OMERI09G11810
N
0.886
ONIVA09G17010
Oryza nivara
ONIVA09G17010
N
0.886
BGIOSGA031062
Oryza indica
BGIOSGA031062
N
0.886
ORUFI09G17170
Oryza rufipogon
ORUFI09G17170
N
0.884
OS09G0509100
Oryza sativa
OS09G0509100
N
0.884
Sb02g029460
Sorghum bicolor
Sb02g029460
N
0.871