Pavir.J38855 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J38855 T299019_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ANAC011
M07169_2.00
Arabidopsis thaliana
RTTDCTTSNNHNDCAAGHWAY

RTWDCTTGHNDNNSAAGHAAY
Dap-seq
OMalley et al.(2016)
ANAC011_col_a
0.936 0.579
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38855.1.p NAC/NAM 31 156

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI3G13630 Brachypodium distachyon BRADI3G13630 N 0.979
MLOC_37364 Hordeum vulgare MLOC_37364 I 0.976
TRIUR3_29260 Triticum urartu TRIUR3_29260 I 0.976
Traes_7DL_D05DA373C Triticum aestivum Traes_7DL_D05DA373C I 0.976
F775_11764 Aegilops tauschii F775_11764 I 0.976
Traes_7BL_8A5D12EE1 Triticum aestivum Traes_7BL_8A5D12EE1 I 0.957
Thhalv10009466m.g Eutrema salsugineum Thhalv10009466m.g I 0.946
Bostr.3359s0109 Boechera stricta Bostr.3359s0109 I 0.943
Bra035488 Brassica rapa Bra035488 I 0.939
Bo8g028730 Brassica oleracea Bo8g028730 I 0.939
ANAC011 Arabidopsis thaliana AT1G32510 D 0.936
ANAC011 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002601 I 0.933
Si013995m.g Setaria italica Si013995m.g N 0.922
Pavir.Fa02204 Panicum virgatum Pavir.Fa02204 N 0.922
Cagra.7865s0013 Capsella grandiflora Cagra.7865s0013 I 0.921
Carubv10011108m.g Capsella rubella Carubv10011108m.g I 0.914
Bra037283 Brassica rapa Bra037283 N 0.903
Bo9g024360 Brassica oleracea Bo9g024360 N 0.899
Cla023594 Citrullus lanatus Cla023594 I 0.896
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.893
Cucsa.319840 Cucumis sativus Cucsa.319840 I 0.893
Cucsa.119310 Cucumis sativus Cucsa.119310 N 0.888
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.886
PK29014.1 Cannabis sativa PK29014.1 N 0.885
Cla007018 Citrullus lanatus Cla007018 N 0.885
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I 0.883
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.882
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N 0.881
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.880
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.880
mgf020234m Mimulus guttatus mgf020234m N 0.878
OS11G0154500 Oryza sativa OS11G0154500 N 0.878
ORUFI11G03420 Oryza rufipogon ORUFI11G03420 N 0.878
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.875
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.874
OBART11G03530 Oryza barthii OBART11G03530 N 0.873
GSMUA_Achr9G29750_001 Musa acuminata GSMUA_Achr9G29750_001 N 0.873
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.873
ORGLA09G0151800 Oryza glaberrima ORGLA09G0151800 I 0.872
OGLUM09G19480 Oryza glumaepatula OGLUM09G19480 I 0.872
OGLUM11G03170 Oryza glumaepatula OGLUM11G03170 N 0.872
OB09G25590 Oryza brachyantha OB09G25590 I 0.872
BGIOSGA034823 Oryza indica BGIOSGA034823 N 0.872
BGIOSGA031230 Oryza indica BGIOSGA031230 I 0.872
OMERI09G14170 Oryza meridionalis OMERI09G14170 I 0.872
OMERI11G03230 Oryza meridionalis OMERI11G03230 N 0.872
ORGLA12G0180300 Oryza glaberrima ORGLA12G0180300 N 0.872
ORGLA11G0032800 Oryza glaberrima ORGLA11G0032800 N 0.872
OPUNC11G03220 Oryza punctata OPUNC11G03220 N 0.872
ONIVA09G20130 Oryza nivara ONIVA09G20130 I 0.872
ONIVA11G03690 Oryza nivara ONIVA11G03690 N 0.872
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.871
Sb02g032230 Sorghum bicolor Sb02g032230 I 0.871