CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J38855
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.J38855
T299019_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC011
M07169_2.00
Arabidopsis thaliana
RTTDCTTSNNHNDCAAGHWAY
RTWDCTTGHNDNNSAAGHAAY
Dap-seq
OMalley et al.(2016)
ANAC011_col_a
0.936
0.579
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J38855.1.p
NAC/NAM
31
156
MPGFRFHPTEEELIDFYLRRRVDGKCFNIELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI3G13630
Brachypodium distachyon
BRADI3G13630
N
0.979
MLOC_37364
Hordeum vulgare
MLOC_37364
I
0.976
TRIUR3_29260
Triticum urartu
TRIUR3_29260
I
0.976
Traes_7DL_D05DA373C
Triticum aestivum
Traes_7DL_D05DA373C
I
0.976
F775_11764
Aegilops tauschii
F775_11764
I
0.976
Traes_7BL_8A5D12EE1
Triticum aestivum
Traes_7BL_8A5D12EE1
I
0.957
Thhalv10009466m.g
Eutrema salsugineum
Thhalv10009466m.g
I
0.946
Bostr.3359s0109
Boechera stricta
Bostr.3359s0109
I
0.943
Bra035488
Brassica rapa
Bra035488
I
0.939
Bo8g028730
Brassica oleracea
Bo8g028730
I
0.939
ANAC011
Arabidopsis thaliana
AT1G32510
D
0.936
ANAC011
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002601
I
0.933
Si013995m.g
Setaria italica
Si013995m.g
N
0.922
Pavir.Fa02204
Panicum virgatum
Pavir.Fa02204
N
0.922
Cagra.7865s0013
Capsella grandiflora
Cagra.7865s0013
I
0.921
Carubv10011108m.g
Capsella rubella
Carubv10011108m.g
I
0.914
Bra037283
Brassica rapa
Bra037283
N
0.903
Bo9g024360
Brassica oleracea
Bo9g024360
N
0.899
Cla023594
Citrullus lanatus
Cla023594
I
0.896
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.893
Cucsa.319840
Cucumis sativus
Cucsa.319840
I
0.893
Cucsa.119310
Cucumis sativus
Cucsa.119310
N
0.888
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.886
PK29014.1
Cannabis sativa
PK29014.1
N
0.885
Cla007018
Citrullus lanatus
Cla007018
N
0.885
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.883
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.882
GSMUA_Achr6G19400_001
Musa acuminata
GSMUA_Achr6G19400_001
N
0.881
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.880
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
0.880
mgf020234m
Mimulus guttatus
mgf020234m
N
0.878
OS11G0154500
Oryza sativa
OS11G0154500
N
0.878
ORUFI11G03420
Oryza rufipogon
ORUFI11G03420
N
0.878
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.875
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.874
OBART11G03530
Oryza barthii
OBART11G03530
N
0.873
GSMUA_Achr9G29750_001
Musa acuminata
GSMUA_Achr9G29750_001
N
0.873
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.873
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.872
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.872
OGLUM11G03170
Oryza glumaepatula
OGLUM11G03170
N
0.872
OB09G25590
Oryza brachyantha
OB09G25590
I
0.872
BGIOSGA034823
Oryza indica
BGIOSGA034823
N
0.872
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.872
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.872
OMERI11G03230
Oryza meridionalis
OMERI11G03230
N
0.872
ORGLA12G0180300
Oryza glaberrima
ORGLA12G0180300
N
0.872
ORGLA11G0032800
Oryza glaberrima
ORGLA11G0032800
N
0.872
OPUNC11G03220
Oryza punctata
OPUNC11G03220
N
0.872
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.872
ONIVA11G03690
Oryza nivara
ONIVA11G03690
N
0.872
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.871
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.871