CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10011108m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10011108m.g
T297496_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC011
M07169_2.00
Arabidopsis thaliana
RTTDCTTSNNHNDCAAGHWAY
RTWDCTTGHNDNNSAAGHAAY
Dap-seq
OMalley et al.(2016)
ANAC011_col_a
0.989
0.939
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10011108m
NAC/NAM
7
140
PPGFRFHPTDEELVGYYLHRRNEGLEIELEIIPFMDLYKFDPWELPEKSFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIICHTTSSSLSSSIIGCRKTLVFHLGRAPFGGRTDWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.7865s0013
Capsella grandiflora
Cagra.7865s0013
I
0.995
ANAC011
Arabidopsis thaliana
AT1G32510
D
0.989
Bostr.3359s0109
Boechera stricta
Bostr.3359s0109
I
0.988
Bo8g028730
Brassica oleracea
Bo8g028730
I
0.987
Thhalv10009466m.g
Eutrema salsugineum
Thhalv10009466m.g
I
0.987
Bra035488
Brassica rapa
Bra035488
I
0.986
ANAC011
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002601
I
0.982
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.944
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.944
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.944
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.943
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.943
Si032702m.g
Setaria italica
Si032702m.g
I
0.942
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.942
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.942
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.942
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.941
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.941
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.941
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.941
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.941
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.941
OB09G25590
Oryza brachyantha
OB09G25590
I
0.941
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.941
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.941
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.941
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.941
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.937
BRADI3G13630
Brachypodium distachyon
BRADI3G13630
N
0.934
F775_13961
Aegilops tauschii
F775_13961
I
0.926
Bra037283
Brassica rapa
Bra037283
N
0.917
Bo9g024360
Brassica oleracea
Bo9g024360
N
0.914
Pavir.J38855
Panicum virgatum
Pavir.J38855
I
0.914
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.906
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.896
gene34005-v1.0-hybrid
Fragaria vesca
gene34005-v1.0-hybrid
N
0.888
Cla007018
Citrullus lanatus
Cla007018
N
0.882
OB01G20290
Oryza brachyantha
OB01G20290
I
0.881
Cucsa.119310
Cucumis sativus
Cucsa.119310
N
0.880
gene35011-v1.0-hybrid
Fragaria vesca
gene35011-v1.0-hybrid
N
0.874
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.874