CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCSAVG00000007313
(
Ciona savignyi
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSCSAVG00000007313
T302841_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW
WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.851
0.745
NR1H4
M00368_2.00
Homo sapiens
NVRGGTCANN
NNTGACCYBN
PBM
Barrera et al.(2016)
NR1H4_REF
0.828
0.764
NR1H4
M05876_2.00
Homo sapiens
DRGKTCAHHKD
HMDDTGAMCYH
SMiLE-seq
Isakova et al.(2017)
NR1H4
0.828
0.764
NR1H4
M08152_2.00
Homo sapiens
NNGGTCATTNN
NNAATGACCNN
ChIP-seq
Mathelier et al.(2014)
MA1110.1
0.828
0.764
NR1H4
M09263_2.00
Homo sapiens
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
0.828
0.764
Nr1h4
M09332_2.00
Mus musculus
CCBVNVGGYCRBTGMCCYB
VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
0.828
0.764
Nr1h4
M09618_2.00
Mus musculus
NRGGBCANTGVCCY
RGGBCANTGVCCYN
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
0.828
0.764
NR1H4
M11086_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q2
0.828
0.764
NR1H4
M11087_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q3
0.828
0.764
NR1H4
M11088_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q5
0.828
0.764
NR1H4
M11089_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
0.828
0.764
NR1H4
M00367_2.00
Homo sapiens
NNNTWTTATDHNN
NNDHATAAWANNN
PBM
Barrera et al.(2016)
NR1H4_C144R
0.828
0.745
nr1h5.S
M11194_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.778
0.782
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000012456
Nuclear receptor
1
24
MDMYTRRKCPECRLRKCRAVGMLE
ENSCSAVP00000012457
Nuclear receptor
199
254
DMCQVCGDRASGYHYNALTCEGCKGFFRRSINRKESHYRCKYGGICEMDMYTRRKC
Links
Other
Nuclear receptor
family TFs
Other
Ciona savignyi
TFs
209 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CLEC002129
Cimex lectularius
CLEC002129
I
0.872
tetur01g15140
Tetranychus urticae
tetur01g15140
I
0.868
RPRC014174
Rhodnius prolixus
RPRC014174
I
0.868
SMAR011767
Strigamia maritima
SMAR011767
I
0.868
TC012112
Tribolium castaneum
TC012112
I
0.868
ISCW003147
Ixodes scapularis
ISCW003147
I
0.868
NV11088
Nasonia vitripennis
NV11088
I
0.868
L798_01568
Zootermopsis nevadensis
L798_01568
I
0.868
ACYPI001692
Acyrthosiphon pisum
ACYPI001692
I
0.868
GB48059
Apis mellifera
GB48059
I
0.868
LDEC009466
Leptinotarsa decemlineata
LDEC009466
I
0.868
DAPPUDRAFT_319648
Daphnia pulex
DAPPUDRAFT_319648
I
0.867
PHUM467460
Pediculus humanus
PHUM467460
I
0.866
BGLB013636
Biomphalaria glabrata
BGLB013636
I
0.859
e_gw.91.63.1
Branchiostoma floridae
e_gw.91.63.1
I
0.859
e_gw.91.225.1
Branchiostoma floridae
e_gw.91.225.1
I
0.859
CGI_10007606
Crassostrea gigas
CGI_10007606
I
0.859
GG10830
Drosophila erecta
FBgn0103135
I
0.853
GH20948
Drosophila grimshawi
FBgn0128410
I
0.853
GI21285
Drosophila mojavensis
FBgn0144015
I
0.853
GJ20887
Drosophila virilis
FBgn0208023
I
0.853
LotgiG170342
Lottia gigantea
LotgiG170342
I
0.852
ADIR001886
Anopheles dirus
ADIR001886
I
0.851
MDOA013387
Musca domestica
MDOA013387
I
0.851
ACUA000806
Anopheles culicifacies
ACUA000806
I
0.851
ACOM026429
Anopheles coluzzii
ACOM026429
I
0.851
AARA003299
Anopheles arabiensis
AARA003299
I
0.851
AATE015478
Anopheles atroparvus
AATE015478
I
0.851
LCUP007589
Lucilia cuprina
LCUP007589
I
0.851
ASTEI02489
Anopheles stephensi
ASTEI02489
I
0.851
AFUN015736
Anopheles funestus
AFUN015736
I
0.851
CpipJ_CPIJ002963
Culex pipiens
CpipJ_CPIJ002963
I
0.851
AMEM018998
Anopheles merus
AMEM018998
I
0.851
AMIN006955
Anopheles minimus
AMIN006955
I
0.851
AEPI000843
Anopheles epiroticus
AEPI000843
I
0.851
AQUA002870
Anopheles quadriannulatus
AQUA002870
I
0.851
AFAF021556
Anopheles farauti
AFAF021556
I
0.851
EcR
Drosophila melanogaster
FBgn0000546
D
0.851
EcR
Drosophila pseudoobscura
FBgn0243551
I
0.851
GA24101
Drosophila pseudoobscura
FBgn0245500
I
0.851
AALB010791
Anopheles albimanus
AALB010791
I
0.851
GK21996
Drosophila willistoni
FBgn0223981
I
0.851
GD10334
Drosophila simulans
FBgn0182106
I
0.851
HMEL012265
Heliconius melpomene
HMEL012265
I
0.851
KGM_08219
Danaus plexippus
KGM_08219
I
0.851
ADAC008672
Anopheles darlingi
ADAC008672
I
0.851
ECR
Aedes aegypti
AAEL009600
I
0.851
AGAP012211
Anopheles gambiae
AGAP012211
I
0.851
BGIBMGA006767
Bombyx mori
BGIBMGA006767
I
0.851
CPIJ002963
Culex quinquefasciatus
CPIJ002963
I
0.851
GM16480
Drosophila sechellia
FBgn0171395
I
0.851
GE19426
Drosophila yakuba
FBgn0236769
I
0.851
GF13818
Drosophila ananassae
FBgn0090845
I
0.851
GL16258
Drosophila persimilis
FBgn0153862
I
0.851
PPAI003337
Phlebotomus papatasi
PPAI003337
I
0.849
EFV58098
Trichinella spiralis
EFV58098
I
0.838
TMUE_s0008014200
Trichuris muris
TMUE_s0008014200
I
0.838
D917_00700
Trichinella nativa
D917_00700
I
0.838
D918_02615
Trichuris suis
D918_02615
I
0.838
nRc.2.0.1.g36086
Romanomermis culicivorax
nRc.2.0.1.g36086
I
0.838
Ocbimv22026489m.g
Octopus bimaculoides
Ocbimv22026489m.g
I
0.832
NR1H4
Erinaceus europaeus
ENSEEUG00000012218
I
0.829
NR1H4
Sus scrofa
ENSSSCG00000000875
I
0.828
Myotis_brandtii_NR1H4_10025557
Myotis brandtii
Myotis_brandtii_NR1H4_10025557
I
0.828
NR1H4
Ochotona princeps
ENSOPRG00000010997
I
0.828
NR1H4
Sorex araneus
ENSSARG00000004689
I
0.828
ENSPANG00000023009
Papio anubis
ENSPANG00000023009
I
0.828
ENSP00000188403
Macaca fascicularis
ENSP00000188403
I
0.828
Nr1h4
Rattus norvegicus
ENSRNOG00000007197
I
0.828
NR1H4
Pan troglodytes
ENSPTRG00000005345
I
0.828
NR1H4
Tupaia belangeri
ENSTBEG00000016715
I
0.828
ENSPPYG00000004867
Pongo abelii
ENSPPYG00000004867
I
0.828
NR1H4
Pteropus vampyrus
ENSPVAG00000014680
I
0.828
ENSSTOG00000011771
Ictidomys tridecemlineatus
ENSSTOG00000011771
I
0.828
NR1H4
Tursiops truncatus
ENSTTRG00000016373
I
0.828
ENSNLEG00000006093
Nomascus leucogenys
ENSNLEG00000006093
I
0.828
NR1H4
Gorilla gorilla
ENSGGOG00000008137
I
0.828
NR1H4
Felis catus
ENSFCAG00000006469
I
0.828
Nr1h4
Dipodomys ordii
ENSDORG00000001224
I
0.828
NR1H4
Loxodonta africana
ENSLAFG00000009154
I
0.828
ENSAMEG00000015232
Ailuropoda melanoleuca
ENSAMEG00000015232
I
0.828
NR1H4
Bos taurus
ENSBTAG00000013596
I
0.828
NR1H4
Canis familiaris
ENSCAFG00000006835
I
0.828
ENSCSAG00000003451
Chlorocebus sabaeus
ENSCSAG00000003451
I
0.828
NR1H4
Cavia porcellus
ENSCPOG00000002168
I
0.828
NR1H4
Callithrix jacchus
ENSCJAG00000002087
I
0.828
NR1H4
Choloepus hoffmanni
ENSCHOG00000013215
I
0.828
NR1H4
Otolemur garnettii
ENSOGAG00000007874
I
0.828
NR1H4
Echinops telfairi
ENSETEG00000019430
I
0.828
ENSBTAP00000018079-D1
Bos grunniens
ENSBTAP00000018079-D1
I
0.828
NR1H4
Dasypus novemcinctus
ENSDNOG00000047912
I
0.828
ENSOARG00000013901
Ovis aries
ENSOARG00000013901
I
0.828
NR1H4
Oryctolagus cuniculus
ENSOCUG00000007177
I
0.828
Nr1h4
Mus musculus
ENSMUSG00000047638
D
0.828
NR1H4
Equus caballus
ENSECAG00000018166
I
0.828
NR1H4
Microcebus murinus
ENSMICG00000013522
I
0.828
NR1H4
Myotis lucifugus
ENSMLUG00000009273
I
0.828
NR1H4
Macaca mulatta
ENSMMUG00000003571
I
0.828
ENSMPUG00000011573
Mustela putorius furo
ENSMPUG00000011573
I
0.828
NR1H4
Homo sapiens
ENSG00000012504
D
0.828
ENSAMXG00000012228
Astyanax mexicanus
ENSAMXG00000012228
I
0.827
WBGene00245913
Onchocerca volvulus
WBGene00245913
I
0.823
WUBG_00356
Wuchereria bancrofti
WUBG_00356
I
0.823
Bm2982
Brugia malayi
Bm2982
I
0.823
nAv.1.0.1.g02667
Acanthocheilonema viteae
nAv.1.0.1.g02667
I
0.823
GPUH_0000103801
Gongylonema pulchrum
GPUH_0000103801
I
0.823
LOAG_16842
Loa loa
LOAG_16842
I
0.823
EEL_0000192101
Elaeophora elaphi
EEL_0000192101
I
0.823
DICVIV_05958
Dictyocaulus viviparus
DICVIV_05958
I
0.823
ASU_11275
Ascaris suum
ASU_11275
I
0.823
TCNE_0001577801
Toxocara canis
TCNE_0001577801
I
0.823
nLs.2.1.2.g05295
Litomosoides sigmodontis
nLs.2.1.2.g05295
I
0.823
DME_0000391501
Dracunculus medinensis
DME_0000391501
I
0.823
nOo.2.0.1.g07306
Onchocerca ochengi
nOo.2.0.1.g07306
I
0.823
OFLC_0000511401
Onchocerca flexuosa
OFLC_0000511401
I
0.823
BTMF_0001180601
Brugia timori
BTMF_0001180601
I
0.823
TCLT_0000569201
Thelazia callipaeda
TCLT_0000569201
I
0.823
L889_g17804
Steinernema feltiae
L889_g17804
I
0.822
L892_g24092
Steinernema scapterisci
L892_g24092
I
0.822
L898_g14201
Steinernema monticolum
L898_g14201
I
0.822
L893_g6815
Steinernema glaseri
L893_g6815
I
0.822
L596_g17693
Steinernema carpocapsae
L596_g17693
I
0.822
SPU_011348
Strongylocentrotus purpuratus
SPU_011348
I
0.794
ACOC_0001278301
Angiostrongylus costaricensis
ACOC_0001278301
I
0.789
HCOI00433800
Haemonchus contortus
HCOI00433800
I
0.789
ANCCAN_11234
Ancylostoma caninum
ANCCAN_11234
I
0.789
NECAME_11142
Necator americanus
NECAME_11142
I
0.789
HCOI00910600
Haemonchus contortus
HCOI00910600
I
0.789
Sakowv30035171m.g
Saccoglossus kowalevskii
Sakowv30035171m.g
I
0.788
Sakowv30016920m.g
Saccoglossus kowalevskii
Sakowv30016920m.g
I
0.788
NBR_0001980401
Nippostrongylus brasiliensis
NBR_0001980401
I
0.788
TELCIR_16351
Teladorsagia circumcincta
TELCIR_16351
I
0.788
Ogr07445
Ophisaurus gracilis
Ogr07445
I
0.787
ENSPSIG00000003828
Pelodiscus sinensis
ENSPSIG00000003828
I
0.784
nr1h4
Tetraodon nigroviridis
ENSTNIG00000012144
I
0.779
ENSLAFG00000028744
Loxodonta africana
ENSLAFG00000028744
I
0.778
ENSLOCG00000015206
Lepisosteus oculatus
ENSLOCG00000015206
I
0.778
ENSMEUG00000009703
Macropus eugenii
ENSMEUG00000009703
I
0.778
ENSLACG00000018478
Latimeria chalumnae
ENSLACG00000018478
I
0.778
ENSGMOG00000003773
Gadus morhua
ENSGMOG00000003773
I
0.778
ENSGALG00000002170
Gallus gallus
ENSGALG00000002170
I
0.778
NR1H4
Gallus gallus
ENSGALG00000011594
I
0.778
NR1H4
Meleagris gallopavo
ENSMGAG00000011690
I
0.778
ENSMODG00000004721
Monodelphis domestica
ENSMODG00000004721
I
0.778
NR1H4
Ornithorhynchus anatinus
ENSOANG00000005583
I
0.778
ENSOCUG00000023188
Oryctolagus cuniculus
ENSOCUG00000023188
I
0.778
ENSOANG00000004519
Ornithorhynchus anatinus
ENSOANG00000004519
I
0.778
Nr1h5
Mus musculus
ENSMUSG00000048938
I
0.778
NR1H4
Monodelphis domestica
ENSMODG00000004996
I
0.778
ENSMPUG00000005775
Mustela putorius furo
ENSMPUG00000005775
I
0.778
nr1h4
Gasterosteus aculeatus
ENSGACG00000011745
I
0.778
nr1h5
Gasterosteus aculeatus
ENSGACG00000004938
I
0.778
ENSAPLG00000008338
Anas platyrhynchos
ENSAPLG00000008338
I
0.778
ENSAPLG00000013289
Anas platyrhynchos
ENSAPLG00000013289
I
0.778
ENSAMXG00000020274
Astyanax mexicanus
ENSAMXG00000020274
I
0.778
ENSAMEG00000017106
Ailuropoda melanoleuca
ENSAMEG00000017106
I
0.778
ENSACAG00000003336
Anolis carolinensis
ENSACAG00000003336
I
0.778
NR1H4
Anolis carolinensis
ENSACAG00000012333
I
0.778
ENSCAFG00000009671
Canis familiaris
ENSCAFG00000009671
I
0.778
nr1h5
Danio rerio
ENSDARG00000031046
I
0.778
ENSFALG00000011082
Ficedula albicollis
ENSFALG00000011082
I
0.778
ENSFCAG00000028538
Felis catus
ENSFCAG00000028538
I
0.778
ENSFALG00000003389
Ficedula albicollis
ENSFALG00000003389
I
0.778
ENSECAG00000015617
Equus caballus
ENSECAG00000015617
I
0.778
nr1h4
Danio rerio
ENSDARG00000057741
I
0.778
ENSDNOG00000034800
Dasypus novemcinctus
ENSDNOG00000034800
I
0.778
ENSOGAG00000030317
Otolemur garnettii
ENSOGAG00000030317
I
0.778
ENSONIG00000009252
Oreochromis niloticus
ENSONIG00000009252
I
0.778
Gfo_R010069
Geospiza fortis
Gfo_R010069
I
0.778
Gfo_R005191
Geospiza fortis
Gfo_R005191
I
0.778
ENSXMAG00000001433
Xiphophorus maculatus
ENSXMAG00000001433
I
0.778
nr1h5
Takifugu rubripes
ENSTRUG00000008191
I
0.778
Pvit_18004
Pogona vitticeps
Pvit_18004
I
0.778
Pvit_15387
Pogona vitticeps
Pvit_15387
I
0.778
Aan_R006662
Calypte anna
Aan_R006662
I
0.778
Aan_R010496
Calypte anna
Aan_R010496
I
0.778
Alligator_sinensis_CCG004779.1
Alligator sinensis
Alligator_sinensis_CCG004779.1
I
0.778
Afo_R012936
Aptenodytes forsteri
Afo_R012936
I
0.778
Brh_R011463
Buceros rhinoceros
Brh_R011463
I
0.778
Brh_R011894
Buceros rhinoceros
Brh_R011894
I
0.778
Cmyd_10021697
Chelonia mydas
Cmyd_10021697
I
0.778
Cmyd_10004101
Chelonia mydas
Cmyd_10004101
I
0.778
Tal_R008756
Tyto alba
Tal_R008756
I
0.778
Tal_R013008
Tyto alba
Tal_R013008
I
0.778
nr1h4
Oryzias latipes
ENSORLG00000011270
I
0.778
ENSPFOG00000016166
Poecilia formosa
ENSPFOG00000016166
I
0.778
nr1h5
Xenopus tropicalis
XB-GENE-486722
I
0.778
nr1h5.S
Xenopus laevis
XB-GENE-6251607
D
0.778
ENSONIG00000014678
Oreochromis niloticus
ENSONIG00000014678
I
0.778
nr1h5.L
Xenopus laevis
XB-GENE-864860
I
0.778
ENSPSIG00000005774
Pelodiscus sinensis
ENSPSIG00000005774
I
0.778
Nr1h5
Rattus norvegicus
ENSRNOG00000023073
I
0.778
NR1H4
Taeniopygia guttata
ENSTGUG00000008977
I
0.778
nr1h4
Takifugu rubripes
ENSTRUG00000007314
I
0.778
ENSTGUG00000000964
Taeniopygia guttata
ENSTGUG00000000964
I
0.778
ENSSTOG00000027072
Ictidomys tridecemlineatus
ENSSTOG00000027072
I
0.778
ENSSHAG00000010518
Sarcophilus harrisii
ENSSHAG00000010518
I
0.778
ENSSHAG00000012333
Sarcophilus harrisii
ENSSHAG00000012333
I
0.778
Afo_R001939
Aptenodytes forsteri
Afo_R001939
I
0.778
ENSXMAG00000012678
Xiphophorus maculatus
ENSXMAG00000012678
I
0.777
ENSLOCG00000010390
Lepisosteus oculatus
ENSLOCG00000010390
I
0.777
ENSGMOG00000015966
Gadus morhua
ENSGMOG00000015966
I
0.777
nr1h5
Tetraodon nigroviridis
ENSTNIG00000003487
I
0.777
ENSPFOG00000016102
Poecilia formosa
ENSPFOG00000016102
I
0.777
nr1h5
Tetraodon nigroviridis
ENSTNIG00000004195
I
0.777
CapteG125155
Capitella teleta
CapteG125155
I
0.764
estExt_fgenesh2_pg.C_2910013
Branchiostoma floridae
estExt_fgenesh2_pg.C_2910013
I
0.758
gw.2854.3.1
Branchiostoma floridae
gw.2854.3.1
I
0.758
ENSCING00000003634
Ciona intestinalis
ENSCING00000003634
N
0.105